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comparison structure.xml @ 2:0080ad37f8a0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structure commit 23755ec4deed7de2d80bfb7de30e0bfc2eaa3818
author iuc
date Wed, 29 Aug 2018 11:19:42 -0400
parents 64e681a1cad5
children 4bd5e5dbc6c5
comparison
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1:64e681a1cad5 2:0080ad37f8a0
11 mv '$extraparams' '$out_extraparams' && 11 mv '$extraparams' '$out_extraparams' &&
12 12
13 mkdir out log 13 mkdir out log
14 14
15 #for $run in range(1, int($nb_run) + 1): 15 #for $run in range(1, int($nb_run) + 1):
16 && structure -i '$infile' -o outfile -m '$out_mainparams' -e '$out_extraparams' > 'log/run${run}_K_${main.MAXPOPS}.log' 16 && structure -i '$infile' -o outfile -m '$out_mainparams' -e '$out_extraparams' > 'log/K_${main.MAXPOPS}_run_${run}_f.log'
17 && mv 'outfile_f' 'out/run${run}_K_${main.MAXPOPS}.out' 17 && mv 'outfile_f' 'out/K_${main.MAXPOPS}_run_${run}_f'
18 #end for 18 #end for
19 19
20 ]]></command> 20 ]]></command>
21 <configfiles> 21 <configfiles>
22 <configfile name="mainparams"><![CDATA[ 22 <configfile name="mainparams"><![CDATA[
428 <conditional name="randomize_cond"> 428 <conditional name="randomize_cond">
429 <param name="RANDOMIZE" value="0" /> 429 <param name="RANDOMIZE" value="0" />
430 </conditional> 430 </conditional>
431 </section> 431 </section>
432 <output_collection name="out" type="list"> 432 <output_collection name="out" type="list">
433 <element name="run1_K_2.out" value="testdata1_f" lines_diff="6" /> 433 <element name="K_2_run_1_f" value="testdata1_f" lines_diff="6" />
434 <element name="run2_K_2.out" value="testdata1_f" lines_diff="6" /> 434 <element name="K_2_run_2_f" value="testdata1_f" lines_diff="6" />
435 </output_collection> 435 </output_collection>
436 <output_collection name="log" type="list"> 436 <output_collection name="log" type="list">
437 <element name="run1_K_2.log"> 437 <element name="K_2_run_1_f.log">
438 <assert_contents> 438 <assert_contents>
439 <has_line line="Final results printed to file outfile_f" /> 439 <has_line line="Final results printed to file outfile_f" />
440 </assert_contents> 440 </assert_contents>
441 </element> 441 </element>
442 <element name="run2_K_2.log"> 442 <element name="K_2_run_2_f.log">
443 <assert_contents> 443 <assert_contents>
444 <has_line line="Final results printed to file outfile_f" /> 444 <has_line line="Final results printed to file outfile_f" />
445 </assert_contents> 445 </assert_contents>
446 </element> 446 </element>
447 </output_collection> 447 </output_collection>