Mercurial > repos > iuc > structure

diff structure.xml @ 3:4bd5e5dbc6c5 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structure commit f03b7df7b3e4fd099ae0e1bd195c41ab2e0fa227"
author iuc
date Sun, 20 Mar 2022 10:57:34 +0000
parents 0080ad37f8a0
children
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line diff
--- a/structure.xml	Wed Aug 29 11:19:42 2018 -0400
+++ b/structure.xml	Sun Mar 20 10:57:34 2022 +0000
@@ -1,14 +1,21 @@
-<tool id="structure" name="Structure" version="2.3.4">
+<tool id="structure" name="Structure" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05">
     <description>using multi-locus genotype data to investigate population structure</description>
+    <xrefs>
+        <xref type="bio.tools">structure</xref>
+    </xrefs>
+    <macros>
+        <token name="@TOOL_VERSION@">2.3.4</token>
+        <token name="@VERSION_SUFFIX@">1</token>
+    </macros>
     <requirements>
-        <requirement type="package" version="2.3.4">structure</requirement>
+        <requirement type="package" version="@TOOL_VERSION@">structure</requirement>
     </requirements>
     <version_command><![CDATA[
         structure | grep -E -o 'Version.+'
     ]]></version_command>
     <command detect_errors="exit_code"><![CDATA[
-        mv '$mainparams' '$out_mainparams' &&
-        mv '$extraparams' '$out_extraparams' &&
+        cp '$mainparams' '$out_mainparams' &&
+        cp '$extraparams' '$out_extraparams' &&
 
         mkdir out log
 
@@ -220,7 +227,7 @@
         ]]></configfile>
     </configfiles>
     <inputs>
-        <param name="infile" type="data" label="Genotype data" format="tabular" />
+        <param name="infile" type="data" label="Genotype data" format="txt,tabular" />
         <param name="nb_run" value="1" type="integer" label="Number of runs" min="1" max="10" help="Note that the runs are sequential. Please launch separate runs if it's too long" />
         <section name="main" title="mainparams" expanded="True">
             <!--Basic Program Parameters-->