Mercurial > repos > iuc > suite_mothur

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit dfdd4c590370ecb3a9806314d43eb5668e36a01a"
author iuc
date Fri, 22 Jan 2021 02:07:20 +0000
parents a8aba90dc716
children
comparison
equal deleted inserted replaced
13:a8aba90dc716 14:1c726cc47ae6
1 <?xml version="1.0" ?> 1 <?xml version="1.0" ?>
2 <repositories description="A suite of tools designed to bring the mothur project into Galaxy."> 2 <repositories description="A suite of tools designed to bring the mothur project into Galaxy.">
3 <repository owner="iuc" name="mothur_classify_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="8ca80de3f4ef"/> 3 <repository owner="iuc" name="mothur_get_oturep" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="305ce07a4b16"/>
4 <repository owner="iuc" name="mothur_create_database" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3cd1ccb4d58b"/> 4 <repository owner="iuc" name="mothur_dist_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f25598da7174"/>
5 <repository owner="iuc" name="mothur_make_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5eaf2d7253f6"/> 5 <repository owner="iuc" name="mothur_summary_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="609770e516fa"/>
6 <repository owner="iuc" name="mothur_screen_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c1feef4d5e34"/> 6 <repository owner="iuc" name="mothur_make_lookup" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="23c1af22331b"/>
7 <repository owner="iuc" name="mothur_remove_otulabels" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1f6046c0efdd"/> 7 <repository owner="iuc" name="mothur_get_otulist" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="85f75125d861"/>
8 <repository owner="iuc" name="mothur_reverse_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="be74be7f5d90"/> 8 <repository owner="iuc" name="mothur_phylotype" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4d219b4dfd6a"/>
9 <repository owner="iuc" name="mothur_merge_files" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f5dba396fe63"/> 9 <repository owner="iuc" name="mothur_get_coremicrobiome" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="da05ce41f8f0"/>
10 <repository owner="iuc" name="mothur_mantel" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ea41c6924945"/> 10 <repository owner="iuc" name="mothur_indicator" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1c6dadf7bc72"/>
11 <repository owner="iuc" name="mothur_filter_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="89b9efa3c1f0"/> 11 <repository owner="iuc" name="mothur_summary_qual" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="86a40294e149"/>
12 <repository owner="iuc" name="mothur_chop_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bfb14e1053a1"/> 12 <repository owner="iuc" name="mothur_count_groups" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="03c86648a52e"/>
13 <repository owner="iuc" name="mothur_get_oturep" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1e1a6eaae624"/> 13 <repository owner="iuc" name="mothur_filter_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2d1dbf69f589"/>
14 <repository owner="iuc" name="mothur_summary_single" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="782564664543"/> 14 <repository owner="iuc" name="mothur_collect_single" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c9d3eed082fc"/>
15 <repository owner="iuc" name="mothur_classify_tree" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="17081663ab68"/> 15 <repository owner="iuc" name="mothur_lefse" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ccd1ce71c11f"/>
16 <repository owner="iuc" name="mothur_trim_flows" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1f336ed182b8"/> 16 <repository owner="iuc" name="mothur_cluster_split" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1b7fd1678230"/>
17 <repository owner="iuc" name="mothur_rarefaction_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="76149f899b5c"/> 17 <repository owner="iuc" name="mothur_sort_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fc60d2e290a4"/>
18 <repository owner="iuc" name="mothur_phylo_diversity" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="20b1d5bb66d0"/> 18 <repository owner="iuc" name="mothur_otu_association" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a02117aa58a5"/>
19 <repository owner="iuc" name="mothur_get_otulabels" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6b173f5aa3ca"/> 19 <repository owner="iuc" name="mothur_venn" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4db54b1c1d83"/>
20 <repository owner="iuc" name="mothur_merge_groups" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="23d11599dfaf"/> 20 <repository owner="iuc" name="mothur_chimera_uchime" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0706d327ecae"/>
21 <repository owner="iuc" name="mothur_get_lineage" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="65853cd9ac99"/> 21 <repository owner="iuc" name="mothur_pcr_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7dba7376870c"/>
22 <repository owner="iuc" name="mothur_make_lookup" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d20ab289b0c0"/> 22 <repository owner="iuc" name="mothur_pca" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="46689a444f2b"/>
23 <repository owner="iuc" name="mothur_cluster_classic" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="97ac7726c985"/> 23 <repository owner="iuc" name="mothur_get_sabund" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c550ce2ebe1f"/>
24 <repository owner="iuc" name="mothur_libshuff" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1fe5098be27a"/> 24 <repository owner="iuc" name="mothur_deunique_tree" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d247213cebfc"/>
25 <repository owner="iuc" name="mothur_count_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="014583f8e83b"/> 25 <repository owner="iuc" name="mothur_unifrac_unweighted" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2933ee6251d8"/>
26 <repository owner="iuc" name="mothur_venn" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="139bdc1c3b48"/> 26 <repository owner="iuc" name="mothur_consensus_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6f281dc9d01c"/>
27 <repository owner="iuc" name="mothur_get_label" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="07d9a6a72e6d"/> 27 <repository owner="iuc" name="mothur_trim_flows" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1fead600dbd4"/>
28 <repository owner="iuc" name="mothur_summary_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="8c18ced5e8c3"/> 28 <repository owner="iuc" name="mothur_filter_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3524ca06478e"/>
29 <repository owner="iuc" name="mothur_make_group" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7ea39cdd3c5d"/> 29 <repository owner="iuc" name="mothur_make_fastq" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f09c0a3bf8b9"/>
30 <repository owner="iuc" name="mothur_dist_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="10f5ecfab7bb"/> 30 <repository owner="iuc" name="mothur_taxonomy_to_krona" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a97107cc4c93"/>
31 <repository owner="iuc" name="mothur_make_biom" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ecd90b4198a2"/> 31 <repository owner="iuc" name="mothur_summary_tax" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a7e1d78c70f5"/>
32 <repository owner="iuc" name="mothur_homova" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ca2b0847c8a2"/> 32 <repository owner="iuc" name="mothur_align_check" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2f668a63a256"/>
33 <repository owner="iuc" name="mothur_sffinfo" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="8b42e4ec39df"/> 33 <repository owner="iuc" name="mothur_get_rabund" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4a52424269e1"/>
34 <repository owner="iuc" name="mothur_trim_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="38eea52b9ef7"/> 34 <repository owner="iuc" name="mothur_remove_otulabels" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b9e2724e9fc7"/>
35 <repository owner="iuc" name="mothur_get_mimarkspackage" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9983b77b0532"/> 35 <repository owner="iuc" name="mothur_dist_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0554c9338ca0"/>
36 <repository owner="iuc" name="mothur_remove_rare" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7b6e00f6c21f"/> 36 <repository owner="iuc" name="mothur_remove_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5097ac2cbfc3"/>
37 <repository owner="iuc" name="mothur_list_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3612e382d294"/> 37 <repository owner="iuc" name="mothur_merge_groups" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ddd068a49efe"/>
38 <repository owner="iuc" name="mothur_list_otulabels" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c2d81e2bf502"/> 38 <repository owner="iuc" name="mothur_merge_sfffiles" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b562d71b9508"/>
39 <repository owner="iuc" name="mothur_clearcut" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a735e855f28f"/> 39 <repository owner="iuc" name="mothur_get_otulabels" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fbd1d5bf02bf"/>
40 <repository owner="iuc" name="mothur_cluster_fragments" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f49de3951b73"/> 40 <repository owner="iuc" name="mothur_remove_dists" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="56ad298415d8"/>
41 <repository owner="iuc" name="mothur_collect_single" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="acfb60d5d435"/> 41 <repository owner="iuc" name="mothur_chop_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e1dd67d13282"/>
42 <repository owner="iuc" name="mothur_degap_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1cbf0af70205"/> 42 <repository owner="iuc" name="mothur_classify_tree" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5d8809423177"/>
43 <repository owner="iuc" name="mothur_anosim" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="87c5f82dac4c"/> 43 <repository owner="iuc" name="mothur_heatmap_sim" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7f5707dd6073"/>
44 <repository owner="iuc" name="mothur_get_groups" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="dd84e5f5eeaa"/> 44 <repository owner="iuc" name="mothur_summary_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="545234c1d925"/>
45 <repository owner="iuc" name="mothur_merge_taxsummary" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="41f056a2ca71"/> 45 <repository owner="iuc" name="mothur_list_otulabels" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1c8906cc1ddd"/>
46 <repository owner="iuc" name="mothur_pca" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ee26037477a1"/> 46 <repository owner="iuc" name="mothur_split_abund" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="cd7b11709aa9"/>
47 <repository owner="iuc" name="mothur_amova" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="389ac95dc2f5"/> 47 <repository owner="iuc" name="mothur_create_database" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="16f6d606521a"/>
48 <repository owner="iuc" name="mothur_shhh_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e7327eaaab37"/> 48 <repository owner="iuc" name="mothur_remove_lineage" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="947faa8b3205"/>
49 <repository owner="iuc" name="mothur_otu_hierarchy" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="98abd0047263"/> 49 <repository owner="iuc" name="mothur_shhh_flows" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="dfaf60f40e94"/>
50 <repository owner="iuc" name="mothur_sens_spec" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="27171cf0b8ba"/> 50 <repository owner="iuc" name="mothur_degap_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6f08af23888a"/>
51 <repository owner="iuc" name="mothur_primer_design" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="aa4dcd3099fe"/> 51 <repository owner="iuc" name="mothur_homova" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="89054fe2207f"/>
52 <repository owner="iuc" name="mothur_classify_otu" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="86b2201a1f4b"/> 52 <repository owner="iuc" name="mothur_list_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="dd84878a5f99"/>
53 <repository owner="iuc" name="mothur_split_abund" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="246519916e6a"/> 53 <repository owner="iuc" name="mothur_get_relabund" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1593a3542944"/>
54 <repository owner="iuc" name="mothur_tree_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ae1468c3e1fa"/> 54 <repository owner="iuc" name="mothur_sffinfo" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="09e3b0966a11"/>
55 <repository owner="iuc" name="mothur_sub_sample" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="893d9058d563"/> 55 <repository owner="iuc" name="mothur_get_label" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ee13e5a4f9f3"/>
56 <repository owner="iuc" name="mothur_get_coremicrobiome" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="618612060af3"/> 56 <repository owner="iuc" name="mothur_chimera_ccode" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="751904c1033d"/>
57 <repository owner="iuc" name="mothur_summary_tax" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c85146fe9890"/> 57 <repository owner="iuc" name="mothur_corr_axes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="03b02c255008"/>
58 <repository owner="iuc" name="mothur_sort_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="56bf9112c46b"/> 58 <repository owner="iuc" name="mothur_pre_cluster" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="05183ee20cf8"/>
59 <repository owner="iuc" name="mothur_make_sra" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="abb205c9b967"/> 59 <repository owner="iuc" name="mothur_amova" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="58b8ae43d27f"/>
60 <repository owner="iuc" name="mothur_summary_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4af62516059b"/> 60 <repository owner="iuc" name="mothur_otu_hierarchy" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f9326e93f5c3"/>
61 <repository owner="iuc" name="mothur_make_design" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4228d1b7aa01"/> 61 <repository owner="iuc" name="mothur_sub_sample" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="67cb43432196"/>
62 <repository owner="iuc" name="mothur_remove_otus" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6bdb704814f4"/> 62 <repository owner="iuc" name="mothur_make_contigs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4e9136c2c4c3"/>
63 <repository owner="iuc" name="mothur_unifrac_weighted" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="09f802a2c3fa"/> 63 <repository owner="iuc" name="mothur_parse_list" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="408650f291f7"/>
64 <repository owner="iuc" name="mothur_filter_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="382b60f3756e"/> 64 <repository owner="iuc" name="mothur_get_lineage" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0bbfc05d924e"/>
65 <repository owner="iuc" name="mothur_fastq_info" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="25f02dced96c"/> 65 <repository owner="iuc" name="mothur_unifrac_weighted" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="88c441e56578"/>
66 <repository owner="iuc" name="mothur_biom_info" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="223e748e0268"/> 66 <repository owner="iuc" name="mothur_sens_spec" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5ff10ccd7100"/>
67 <repository owner="iuc" name="mothur_get_dists" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d1fba6b01a90"/> 67 <repository owner="iuc" name="mothur_chimera_slayer" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ab328c924a02"/>
68 <repository owner="iuc" name="mothur_align_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="72276610cdfa"/> 68 <repository owner="iuc" name="mothur_align_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="abf7c15ecfef"/>
69 <repository owner="iuc" name="mothur_get_sharedseqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="414307889d75"/> 69 <repository owner="iuc" name="mothur_get_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f5cb275acba9"/>
70 <repository owner="iuc" name="mothur_unique_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="71788e5ced45"/> 70 <repository owner="iuc" name="mothur_parsimony" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="aff64115d95f"/>
71 <repository owner="iuc" name="mothur_pre_cluster" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="872dbea91d49"/> 71 <repository owner="iuc" name="mothur_heatmap_bin" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="aeacbc9d5333"/>
72 <repository owner="iuc" name="mothur_seq_error" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="cd31c11bcc25"/> 72 <repository owner="iuc" name="mothur_get_otus" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="dbb1bc225df1"/>
73 <repository owner="iuc" name="mothur_make_lefse" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b009f1b8e922"/> 73 <repository owner="iuc" name="mothur_cluster_classic" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9bae6b20ed44"/>
74 <repository owner="iuc" name="mothur_chimera_slayer" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0fde524609b1"/> 74 <repository owner="iuc" name="mothur_metastats" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="19836a38dc20"/>
75 <repository owner="iuc" name="mothur_deunique_tree" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1ace9d6863aa"/> 75 <repository owner="iuc" name="mothur_normalize_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5e94c135ef00"/>
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