Mercurial > repos > iuc > suite_mothur

diff repository_dependencies.xml @ 10:d1090b154857 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit debdcdbb89f9bf3e2c3eed05cb078eddb27d4684"
author iuc
date Mon, 02 Dec 2019 06:51:23 -0500
parents e21dc6f8d8b6
children ab9a91d5f796
line wrap: on
line diff
--- a/repository_dependencies.xml	Fri Aug 03 14:50:09 2018 -0400
+++ b/repository_dependencies.xml	Mon Dec 02 06:51:23 2019 -0500
@@ -1,131 +1,132 @@
-<?xml version="1.0"?>
-<repositories description="A suite of tools designed to bring the mothur project into Galaxy.">  <repository changeset_revision="3b426f118175" name="mothur_biom_info" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="678c90b43e17" name="mothur_make_lefse" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="34669a26ea47" name="mothur_create_database" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="71e7d93a593e" name="mothur_taxonomy_to_krona" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="ddda05cfccb4" name="mothur_sens_spec" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="a899cc1416bc" name="mothur_chimera_slayer" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="03450507aa98" name="mothur_reverse_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="c05906ab8c41" name="mothur_pairwise_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="f31e3b8f2336" name="mothur_get_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="a7fced14ce99" name="mothur_degap_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="c49a6454726c" name="mothur_trim_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="052bc33e134e" name="mothur_merge_groups" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="b5f98810181e" name="mothur_make_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="196b1583580a" name="mothur_remove_rare" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="247d1bacbefe" name="mothur_mimarks_attributes" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="6936b18e2a9e" name="mothur_get_dists" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="4b72b6c43327" name="mothur_make_contigs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="7c3f9c0850ac" name="mothur_unique_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="68005ede9e6e" name="mothur_homova" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="772e6a5b7358" name="mothur_lefse" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="411ddfefe041" name="mothur_summary_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="e432f17722c8" name="mothur_consensus_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="eefbe872fd04" name="mothur_libshuff" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="5d134e0b31fd" name="mothur_align_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="4d56c7e82ba6" name="mothur_trim_flows" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="2857a688a7e9" name="mothur_summary_single" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="e9b12c5ad27f" name="mothur_make_fastq" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="03b326e1f6a1" name="mothur_rename_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="f02f3ca6dfd1" name="mothur_fastq_info" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="beb4e0832f3b" name="mothur_get_communitytype" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="d850b4b9659d" name="mothur_split_abund" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="7474b222205d" name="mothur_pca" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="7756edb68ddc" name="mothur_get_relabund" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="bb8b69e90604" name="mothur_get_label" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="a0ce9fb3f260" name="mothur_filter_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="6e8cdd7e6825" name="mothur_primer_design" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="e4f4c1c0d193" name="mothur_venn" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="7c5b7dddd02e" name="mothur_remove_groups" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="ea1a32c7927e" name="mothur_list_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="65955ae23f29" name="mothur_parsimony" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="cbe644faff63" name="mothur_sort_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="ae1411cffbee" name="mothur_get_coremicrobiome" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="ad80d646ed1c" name="mothur_normalize_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="fbbe2b081299" name="mothur_pre_cluster" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="94d8dbac60d8" name="mothur_screen_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="3597ca9089a5" name="mothur_unifrac_unweighted" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="a03c9ebf1959" name="mothur_seq_error" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="79255ca0b19a" name="mothur_chimera_ccode" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="9c78c5ffa049" name="mothur_collect_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="2f633c057c0d" name="mothur_remove_lineage" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="20e764494303" name="mothur_clearcut" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="3fc101a0498f" name="mothur_bin_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="ad0df6ad0499" name="mothur_chimera_bellerophon" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="8091da04fbac" name="mothur_rarefaction_single" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="3bb756df109c" name="mothur_cluster" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="0968daa9b52f" name="mothur_corr_axes" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="f2b626fe7082" name="mothur_get_group" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="afc13b55ead3" name="mothur_make_group" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="d531f28e8266" name="mothur_chimera_vsearch" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="652d2803062c" name="mothur_anosim" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="419266a5e29e" name="mothur_rarefaction_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="98083c5a4338" name="mothur_deunique_tree" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="ec717c8dce9b" name="mothur_merge_sfffiles" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="0232e2fe594c" name="mothur_indicator" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
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-  <repository changeset_revision="931e9b25e81d" name="mothur_classify_tree" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="e44c38a17c7a" name="mothur_filter_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="648b3da84b07" name="mothur_get_oturep" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="2fa446f85b18" name="mothur_remove_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="98f1cc2bc428" name="mothur_nmds" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="d50fdfdc2a0c" name="mothur_summary_qual" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
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-  <repository changeset_revision="dd533a49feed" name="mothur_align_check" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="0674bdcb3019" name="mothur_heatmap_sim" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="65b370206748" name="mothur_classify_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="0369aff1be76" name="mothur_deunique_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="cc3eef74fe31" name="mothur_chimera_pintail" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="d56e5a7a9cef" name="mothur_make_lookup" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="b1c35f71607f" name="mothur_get_groups" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="6ba59950d95c" name="mothur_cluster_classic" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="5aa5d26efeea" name="mothur_amova" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="0c9eb32683bf" name="mothur_list_otulabels" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
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-  <repository changeset_revision="6ee54b761c3c" name="mothur_shhh_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
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-  <repository changeset_revision="29882f4a1ef3" name="mothur_classify_otu" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="58f143161d30" name="mothur_phylotype" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="c9fc98593dec" name="mothur_pcoa" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="17b471efdc40" name="mothur_mantel" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="143cd841de28" name="mothur_make_biom" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="12b1bd17d614" name="mothur_merge_files" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="12507ed33710" name="mothur_sffinfo" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="630ad54722c6" name="mothur_get_otulabels" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
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-  <repository changeset_revision="2b8dce0751e5" name="mothur_pcr_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="136cb4f4b996" name="mothur_unifrac_weighted" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="35c91da65b75" name="mothur_chimera_check" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="ea7b70e1a61b" name="mothur_remove_dists" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="7590f83a6419" name="mothur_otu_hierarchy" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="dc02f3831a1a" name="mothur_count_groups" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="ce3c9cb04314" name="mothur_remove_otus" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="4e3780d096af" name="mothur_chimera_uchime" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="7cca6773bc2a" name="mothur_shhh_flows" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="881f9a4013a9" name="mothur_cluster_fragments" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="5e6fddbd1366" name="mothur_heatmap_bin" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="ba9df7320629" name="mothur_remove_otulabels" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="6e1047fa1a51" name="mothur_chop_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="5280cc8135eb" name="mothur_make_design" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="68c20caae797" name="mothur_split_groups" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="57eb5df69242" name="mothur_dist_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="75b80a4fa86d" name="mothur_get_sharedseqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
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-  <repository changeset_revision="3868f54b097e" name="mothur_phylo_diversity" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="5eb0f670aa35" name="mothur_summary_tax" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="34e1fbd32a04" name="mothur_sub_sample" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="7f212a2a4a3b" name="mothur_collect_single" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="3b803b7f3388" name="mothur_parse_list" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="6c54b38dd0da" name="mothur_get_mimarkspackage" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="10866c1f8e06" name="mothur_metastats" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="0fb08aeb215e" name="mothur_otu_association" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="80bd73567a2c" name="mothur_merge_taxsummary" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="33a3f68dc34b" name="mothur_make_sra" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="128cbea05aeb" name="mothur_chimera_perseus" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="b2b145255ece" name="mothur_get_lineage" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="c79ecbd31c44" name="mothur_get_sabund" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-</repositories>
+<?xml version="1.0" ?>
+<repositories description="A suite of tools designed to bring the mothur project into Galaxy.">
+    <repository changeset_revision="fd62ac4a6b84" name="mothur_get_otulabels" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="a41ba5f5f6b8" name="mothur_get_sabund" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="1ba1fe2a0438" name="mothur_corr_axes" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="11be0e5f3ebb" name="mothur_summary_qual" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="bd695645069f" name="mothur_get_rabund" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="1edab4936153" name="mothur_fastq_info" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="200defe4c42b" name="mothur_venn" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="c3f0b847dc40" name="mothur_sens_spec" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="ba2b321b6b64" name="mothur_rename_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="c7d41770f4ce" name="mothur_phylo_diversity" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="948d5731dbe0" name="mothur_homova" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="e29c05b88096" name="mothur_make_biom" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
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\ No newline at end of file