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annotate tool-data/all_fasta.loc.sample @ 1:b15fbf90db53 draft default tip

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"planemo upload for repository https://github.com/nebiolabs/tasmanian-mismatch commit d67025e9c7764d77f3f622b4d1ac0535b06c63de"
author iuc
date Sat, 24 Jul 2021 17:47:35 +0000
parents bc0b40dec7d2
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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bc0b40dec7d2 "planemo upload for repository https://github.com/nebiolabs/tasmanian-mismatch commit a64a371ca1ed117c9bd8af743d847128fbce461c"
iuc
parents:
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1 #This file lists the locations and dbkeys of all the fasta files
bc0b40dec7d2 "planemo upload for repository https://github.com/nebiolabs/tasmanian-mismatch commit a64a371ca1ed117c9bd8af743d847128fbce461c"
iuc
parents:
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2 #under the "genome" directory (a directory that contains a directory
bc0b40dec7d2 "planemo upload for repository https://github.com/nebiolabs/tasmanian-mismatch commit a64a371ca1ed117c9bd8af743d847128fbce461c"
iuc
parents:
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3 #for each build). The script extract_fasta.py will generate the file
bc0b40dec7d2 "planemo upload for repository https://github.com/nebiolabs/tasmanian-mismatch commit a64a371ca1ed117c9bd8af743d847128fbce461c"
iuc
parents:
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4 #all_fasta.loc. This file has the format (white space characters are
bc0b40dec7d2 "planemo upload for repository https://github.com/nebiolabs/tasmanian-mismatch commit a64a371ca1ed117c9bd8af743d847128fbce461c"
iuc
parents:
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5 #TAB characters):
bc0b40dec7d2 "planemo upload for repository https://github.com/nebiolabs/tasmanian-mismatch commit a64a371ca1ed117c9bd8af743d847128fbce461c"
iuc
parents:
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6 #
bc0b40dec7d2 "planemo upload for repository https://github.com/nebiolabs/tasmanian-mismatch commit a64a371ca1ed117c9bd8af743d847128fbce461c"
iuc
parents:
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7 #<unique_build_id> <dbkey> <display_name> <file_path>
bc0b40dec7d2 "planemo upload for repository https://github.com/nebiolabs/tasmanian-mismatch commit a64a371ca1ed117c9bd8af743d847128fbce461c"
iuc
parents:
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8 #
bc0b40dec7d2 "planemo upload for repository https://github.com/nebiolabs/tasmanian-mismatch commit a64a371ca1ed117c9bd8af743d847128fbce461c"
iuc
parents:
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9 #So, all_fasta.loc could look something like this:
bc0b40dec7d2 "planemo upload for repository https://github.com/nebiolabs/tasmanian-mismatch commit a64a371ca1ed117c9bd8af743d847128fbce461c"
iuc
parents:
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10 #
bc0b40dec7d2 "planemo upload for repository https://github.com/nebiolabs/tasmanian-mismatch commit a64a371ca1ed117c9bd8af743d847128fbce461c"
iuc
parents:
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11 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa
bc0b40dec7d2 "planemo upload for repository https://github.com/nebiolabs/tasmanian-mismatch commit a64a371ca1ed117c9bd8af743d847128fbce461c"
iuc
parents:
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12 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa
bc0b40dec7d2 "planemo upload for repository https://github.com/nebiolabs/tasmanian-mismatch commit a64a371ca1ed117c9bd8af743d847128fbce461c"
iuc
parents:
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13 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa
bc0b40dec7d2 "planemo upload for repository https://github.com/nebiolabs/tasmanian-mismatch commit a64a371ca1ed117c9bd8af743d847128fbce461c"
iuc
parents:
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14 #
bc0b40dec7d2 "planemo upload for repository https://github.com/nebiolabs/tasmanian-mismatch commit a64a371ca1ed117c9bd8af743d847128fbce461c"
iuc
parents:
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15 #Your all_fasta.loc file should contain an entry for each individual
bc0b40dec7d2 "planemo upload for repository https://github.com/nebiolabs/tasmanian-mismatch commit a64a371ca1ed117c9bd8af743d847128fbce461c"
iuc
parents:
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16 #fasta file. So there will be multiple fasta files for each build,
bc0b40dec7d2 "planemo upload for repository https://github.com/nebiolabs/tasmanian-mismatch commit a64a371ca1ed117c9bd8af743d847128fbce461c"
iuc
parents:
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17 #such as with hg19 above.
bc0b40dec7d2 "planemo upload for repository https://github.com/nebiolabs/tasmanian-mismatch commit a64a371ca1ed117c9bd8af743d847128fbce461c"
iuc
parents:
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18 #