# HG changeset patch
# User iuc
# Date 1627148855 0
# Node ID b15fbf90db53d8b645d74bbe2523a07de1a7c1a1
# Parent  bc0b40dec7d25a59944a950c86b5f8e344683e1e
"planemo upload for repository https://github.com/nebiolabs/tasmanian-mismatch commit d67025e9c7764d77f3f622b4d1ac0535b06c63de"

diff -r bc0b40dec7d2 -r b15fbf90db53 Tasmanian.xml
--- a/Tasmanian.xml	Wed May 20 17:23:42 2020 -0400
+++ b/Tasmanian.xml	Sat Jul 24 17:47:35 2021 +0000
@@ -1,7 +1,12 @@
-<tool id="tasmanian_mismatch" name="Analysis of artifacts with Tasmanian" version="0.1.3" profile="18.09">
+<tool id="tasmanian_mismatch" name="Analysis of artifacts with Tasmanian" version="@TOOL_VERSION@" profile="20.05">
+  <description>Quantify, visualize and summarize mismatches in deep sequencing data</description>
+  <macros>
+	<token name="@TOOL_VERSION@">1.0.7</token>
+	<token name="@SAMTOOLS_VERSION@">1.13</token> 
+  </macros>
   <requirements>
-    <requirement type="package" version="0.1.3">tasmanian-mismatch</requirement> 
-    <requirement type="package" version="1.9">samtools</requirement>
+    <requirement type="package" version="@TOOL_VERSION@">tasmanian-mismatch</requirement> 
+    <requirement type="package" version="@SAMTOOLS_VERSION@">samtools</requirement>
   </requirements>
   <command detect_errors="exit_code">
     <![CDATA[
diff -r bc0b40dec7d2 -r b15fbf90db53 test-data/test2-bed.output
--- a/test-data/test2-bed.output	Wed May 20 17:23:42 2020 -0400
+++ b/test-data/test2-bed.output	Sat Jul 24 17:47:35 2021 +0000
@@ -150,4 +150,4 @@
 2,73,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,5,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
 2,74,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,2,0,0,0,0,4,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
 2,75,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4,0,0,0,0,3,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
-2,76,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,4,0,0,0,0,2,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
\ No newline at end of file
+2,76,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,4,0,0,0,0,2,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
diff -r bc0b40dec7d2 -r b15fbf90db53 test-data/test2-nobed.output
--- a/test-data/test2-nobed.output	Wed May 20 17:23:42 2020 -0400
+++ b/test-data/test2-nobed.output	Sat Jul 24 17:47:35 2021 +0000
@@ -150,4 +150,4 @@
 2,73,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,6,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
 2,74,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,2,0,0,0,0,4,0,0,0,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
 2,75,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4,0,0,0,0,4,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
-2,76,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,4,0,0,0,0,2,0,0,0,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
\ No newline at end of file
+2,76,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,4,0,0,0,0,2,0,0,0,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0