Mercurial > repos > iuc > tb_profiler_collate

diff test-data/tbprofiler_test_1_sample.txt @ 0:9fae5576604a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
author iuc
date Fri, 05 Sep 2025 12:50:05 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/tbprofiler_test_1_sample.txt	Fri Sep 05 12:50:05 2025 +0000
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+sample	main_lineage	sub_lineage	spoligotype	drtype	target_median_depth	pct_reads_mapped	num_reads_mapped	num_dr_variants	num_other_variants	rifampicin	isoniazid	ethambutol	pyrazinamide	moxifloxacin	levofloxacin	bedaquiline	delamanid	pretomanid	linezolid	streptomycin	amikacin	kanamycin	capreomycin	clofazimine	ethionamide	para-aminosalicylic_acid	cycloserine
+ERR2510682	lineage2	lineage2.2.1	-	Pre-XDR-TB	38.0	97.7	2191944	10	75	rpoB p.Ser450Leu (1.00)	inhA c.-777C>T (1.00), katG p.Ser315Thr (1.00)	embA c.-12C>T (1.00), embB p.Tyr334His (0.91)	pncA c.-11A>G (1.00)	gyrA p.Asp94Gly (0.67), gyrA p.Ser91Pro (0.29)	gyrA p.Asp94Gly (0.67), gyrA p.Ser91Pro (0.29)	-	-	-	-	rpsL p.Lys88Arg (1.00)	-	eis c.-12C>T (1.00)	-	-	inhA c.-777C>T (1.00)	-	-