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annotate test-data/tbprofiler_test_1_sample.txt @ 1:97a96d2ce8ea draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/tb-profiler commit 7dba70c70c9fe33353a0fd21803b11cfddc42c32
author iuc
date Tue, 21 Oct 2025 10:24:57 +0000
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1066ef03df53 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
iuc
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1 sample main_lineage sub_lineage spoligotype drtype target_median_depth pct_reads_mapped num_reads_mapped num_dr_variants num_other_variants rifampicin isoniazid ethambutol pyrazinamide moxifloxacin levofloxacin bedaquiline delamanid pretomanid linezolid streptomycin amikacin kanamycin capreomycin clofazimine ethionamide para-aminosalicylic_acid cycloserine
1066ef03df53 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
iuc
parents:
diff changeset
2 ERR2510682 lineage2 lineage2.2.1 - Pre-XDR-TB 38.0 97.7 2191944 10 75 rpoB p.Ser450Leu (1.00) inhA c.-777C>T (1.00), katG p.Ser315Thr (1.00) embA c.-12C>T (1.00), embB p.Tyr334His (0.91) pncA c.-11A>G (1.00) gyrA p.Asp94Gly (0.67), gyrA p.Ser91Pro (0.29) gyrA p.Asp94Gly (0.67), gyrA p.Ser91Pro (0.29) - - - - rpsL p.Lys88Arg (1.00) - eis c.-12C>T (1.00) - - inhA c.-777C>T (1.00) - -