Mercurial > repos > iuc > tbprofiler

changeset 21:60a1dad331ec draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 953b57c6d7c11c3321a43fa8b8c0184bdea9f718
author iuc
date Thu, 03 Jul 2025 14:00:48 +0000
parents 8cb134b8c1a5
children
files tb_profiler_profile.xml
diffstat 1 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/tb_profiler_profile.xml	Sat Nov 16 20:26:57 2024 +0000
+++ b/tb_profiler_profile.xml	Thu Jul 03 14:00:48 2025 +0000
@@ -1,15 +1,15 @@
 <tool id="tb_profiler_profile" name="TB-Profiler Profile" version="@TOOL_VERSION@+galaxy0" profile="20.09" license="AGPL-3.0-or-later">
     <description>Infer strain types and drug resistance markers from sequences</description>
     <macros>
-        <token name="@TOOL_VERSION@">6.4.0</token>
+        <token name="@TOOL_VERSION@">6.6.4</token>
     </macros>
     <xrefs>
         <xref type="bio.tools">tb-profiler</xref>
     </xrefs>
     <requirements>
-        <requirement type="package" version="1.2.6">delly</requirement>
         <requirement type="package" version="@TOOL_VERSION@">tb-profiler</requirement>
     </requirements>
+    <version_command>tb-profiler --version</version_command>
     <command detect_errors="exit_code"><![CDATA[
         #if str($fastq_or_bam.input_select.value) in ("paired_fastq", "paired_collection_fastq", "single_fastq")
             #if str($fastq_or_bam.input_select.value) == "paired_fastq"
@@ -188,7 +188,7 @@
             <output name="output_txt">
                 <assert_contents>
                     <has_line line="Drug-resistance: RR-TB" />
-                    <has_line line="lineage2.2.2&#009;1.000&#009;East-Asian (Beijing)&#009;RD105;RD207" />
+                    <has_line line="lineage2.2.2&#009;100.000&#009;East-Asian (Beijing)&#009;RD105;RD207" />
                     <has_line line="Rifampicin&#009;R&#009;rpoB p.Asp435Val (1.00)" />
                     <has_line line="761110&#009;Rv0667&#009;rpoB&#009;missense_variant&#009;p.Asp435Val&#009;43&#009;1.000&#009;rifampicin&#009;Assoc w R" />
                 </assert_contents>
@@ -203,7 +203,7 @@
             <output name="output_txt">
                 <assert_contents>
                     <has_line line="Drug-resistance: RR-TB" />
-                    <has_line line="lineage2.2.2&#009;1.000&#009;East-Asian (Beijing)&#009;RD105;RD207" />
+                    <has_line line="lineage2.2.2&#009;100.000&#009;East-Asian (Beijing)&#009;RD105;RD207" />
                     <has_line line="Rifampicin&#009;R&#009;rpoB p.Asp435Val (1.00)" />
                     <has_line line="761110&#009;Rv0667&#009;rpoB&#009;missense_variant&#009;p.Asp435Val&#009;43&#009;1.000&#009;rifampicin&#009;Assoc w R" />
                 </assert_contents>
@@ -223,7 +223,7 @@
             </conditional>
             <output name="output_txt">
                 <assert_contents>
-                    <has_line line="lineage2.2.2&#009;1.000&#009;East-Asian (Beijing)&#009;RD105;RD207" />
+                    <has_line line="lineage2.2.2&#009;100.000&#009;East-Asian (Beijing)&#009;RD105;RD207" />
                     <has_line line="761110&#009;Rv0667&#009;rpoB&#009;missense_variant&#009;p.Asp435Val&#009;43&#009;1.000&#009;rifampicin&#009;Assoc w R" />
                 </assert_contents>
             </output>