Lineage | Lineage support fraction | Family | RD |
---|---|---|---|
lineage2 | 0.9940119760479041 | East-Asian | RD105 |
lineage2.2.2 | 1.0 | East-Asian (Beijing) | RD105;RD207 |
Lineage | Family | Spoligotype | RD | Agreement |
---|---|---|---|---|
CHR | GENE | LOCUS | PRODUCT | IS_SNV | EFFECT | POS | REF | ALT | BIOTYPE | NUCLEOTIDE | CONSEQUENCE | IMPACT | PATHWAY |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Chromosome | Rv0014c | GENE_Rv0014c |
NA |
True | synonymous_variant | 15890 | G | A | protein_coding | c.1581C>T | p.Ser527Ser | LOW |
NA |
Chromosome | Rv0127 | GENE_Rv0127 |
NA |
True | synonymous_variant | 154990 | G | T | protein_coding | c.759G>T | p.Arg253Arg | LOW |
NA |
Chromosome | Rv0284 | GENE_Rv0284 |
NA |
True | synonymous_variant | 346693 | G | T | protein_coding | c.1059G>T | p.Ser353Ser | LOW |
NA |
Chromosome | Rv0372c | GENE_Rv0372c |
NA |
True | synonymous_variant | 449194 | G | A | protein_coding | c.192C>T | p.Gly64Gly | LOW |
NA |
Chromosome | Rv0411c | GENE_Rv0411c |
NA |
True | synonymous_variant | 497491 | G | A | protein_coding | c.810C>T | p.Asp270Asp | LOW |
NA |
Chromosome | Rv0667 | GENE_Rv0667 |
NA |
True | missense_variant | 761110 | A | T | protein_coding | c.1304A>T | p.Asp435Val | MODERATE |
NA |
Chromosome | Rv0715 | GENE_Rv0715 |
NA |
True | synonymous_variant | 811753 | C | T | protein_coding | c.12C>T | p.His4His | LOW |
NA |
Chromosome | Rv1391 | GENE_Rv1391 |
NA |
True | synonymous_variant | 1565566 | C | T | protein_coding | c.126C>T | p.Pro42Pro | LOW |
NA |
Chromosome | Rv1630 | GENE_Rv1630 |
NA |
True | synonymous_variant | 1834177 | A | C | protein_coding | c.636A>C | p.Arg212Arg | LOW |
NA |
Chromosome | Rv1640c | GENE_Rv1640c |
NA |
True | synonymous_variant | 1849051 | C | T | protein_coding | c.2985G>A | p.Pro995Pro | LOW |
NA |
Chromosome | Rv2231c | GENE_Rv2231c |
NA |
True | synonymous_variant | 2505085 | G | A | protein_coding | c.615C>T | p.Ala205Ala | LOW |
NA |
Chromosome | Rv2268c | GENE_Rv2268c |
NA |
True | synonymous_variant | 2543395 | T | C | protein_coding | c.882A>G | p.Glu294Glu | LOW |
NA |
Chromosome | Rv2357c | GENE_Rv2357c |
NA |
True | synonymous_variant | 2640807 | G | A | protein_coding | c.258C>T | p.Val86Val | LOW |
NA |
Chromosome | Rv2472 | GENE_Rv2472 |
NA |
True | synonymous_variant | 2775361 | C | T | protein_coding | c.90C>T | p.Arg30Arg | LOW |
NA |
Chromosome | Rv2483c | GENE_Rv2483c |
NA |
True | synonymous_variant | 2789798 | G | T | protein_coding | c.1225C>A | p.Arg409Arg | LOW |
NA |
Chromosome | Rv3109 | GENE_Rv3109 |
NA |
True | synonymous_variant | 3477942 | A | G | protein_coding | c.294A>G | p.Thr98Thr | LOW |
NA |
Chromosome | Rv3210c | GENE_Rv3210c |
NA |
True | synonymous_variant | 3587446 | G | A | protein_coding | c.94C>T | p.Leu32Leu | LOW |
NA |
Chromosome | Rv3799c | GENE_Rv3799c |
NA |
True | synonymous_variant | 4254431 | G | A | protein_coding | c.1518C>T | p.Asp506Asp | LOW |
NA |
Chromosome | Rv3799c | GENE_Rv3799c |
NA |
True | missense_variant | 4254477 | T | C | protein_coding | c.1472A>G | p.His491Arg | MODERATE |
NA |
CHR | GENE | LOCUS | PRODUCT | TYPE | EFFECT | POS | REF | ALT | BIOTYPE | NUCLEOTIDE | CONSEQUENCE | IMPACT | PATHWAY |