Mercurial > repos > iuc > tbvcfreport
diff test-data/rif_resistant_variants_report.txt @ 3:42818629ec4c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
| author | iuc |
|---|---|
| date | Fri, 31 May 2024 20:06:49 +0000 |
| parents | adc0645b945c |
| children |
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--- a/test-data/rif_resistant_variants_report.txt Thu Mar 17 07:33:00 2022 +0000 +++ b/test-data/rif_resistant_variants_report.txt Fri May 31 20:06:49 2024 +0000 @@ -1,4 +1,22 @@ #Rif_resistant Report -#Lineage Family Spoligotype RD Agreement -#CHR GENE IDENTIFIER PRODUCT TYPE ANNOTATION POS REF ALT CONSEQUENCE IMPACT PATHAWAY +#CHR GENE IDENTIFIER PRODUCT IS_SNV ANNOTATION POS REF ALT CONSEQUENCE IMPACT PATHWAY +Chromosome Rv0014c GENE_Rv0014c NOPROTEIN True synonymous_variant 15890 G A p.Ser527Ser LOW +Chromosome Rv0127 GENE_Rv0127 NOPROTEIN True synonymous_variant 154990 G T p.Arg253Arg LOW +Chromosome Rv0284 GENE_Rv0284 NOPROTEIN True synonymous_variant 346693 G T p.Ser353Ser LOW +Chromosome Rv0372c GENE_Rv0372c NOPROTEIN True synonymous_variant 449194 G A p.Gly64Gly LOW +Chromosome Rv0411c GENE_Rv0411c NOPROTEIN True synonymous_variant 497491 G A p.Asp270Asp LOW +Chromosome Rv0667 GENE_Rv0667 NOPROTEIN True missense_variant 761110 A T p.Asp435Val MODERATE +Chromosome Rv0715 GENE_Rv0715 NOPROTEIN True synonymous_variant 811753 C T p.His4His LOW +Chromosome Rv1391 GENE_Rv1391 NOPROTEIN True synonymous_variant 1565566 C T p.Pro42Pro LOW +Chromosome Rv1630 GENE_Rv1630 NOPROTEIN True synonymous_variant 1834177 A C p.Arg212Arg LOW +Chromosome Rv1640c GENE_Rv1640c NOPROTEIN True synonymous_variant 1849051 C T p.Pro995Pro LOW +Chromosome Rv2231c GENE_Rv2231c NOPROTEIN True synonymous_variant 2505085 G A p.Ala205Ala LOW +Chromosome Rv2268c GENE_Rv2268c NOPROTEIN True synonymous_variant 2543395 T C p.Glu294Glu LOW +Chromosome Rv2357c GENE_Rv2357c NOPROTEIN True synonymous_variant 2640807 G A p.Val86Val LOW +Chromosome Rv2472 GENE_Rv2472 NOPROTEIN True synonymous_variant 2775361 C T p.Arg30Arg LOW +Chromosome Rv2483c GENE_Rv2483c NOPROTEIN True synonymous_variant 2789798 G T p.Arg409Arg LOW +Chromosome Rv3109 GENE_Rv3109 NOPROTEIN True synonymous_variant 3477942 A G p.Thr98Thr LOW +Chromosome Rv3210c GENE_Rv3210c NOPROTEIN True synonymous_variant 3587446 G A p.Leu32Leu LOW +Chromosome Rv3799c GENE_Rv3799c NOPROTEIN True synonymous_variant 4254431 G A p.Asp506Asp LOW +Chromosome Rv3799c GENE_Rv3799c NOPROTEIN True missense_variant 4254477 T C p.His491Arg MODERATE