Mercurial > repos > iuc > tbvcfreport
view test-data/rif_resistant_drug_resistance_report.html @ 3:42818629ec4c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
| author | iuc |
|---|---|
| date | Fri, 31 May 2024 20:06:49 +0000 |
| parents | 4934c0ac6197 |
| children |
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<!DOCTYPE html> <html> <head> <title></title> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <link href="https://stackpath.bootstrapcdn.com/bootstrap/4.1.3/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-MCw98/SFnGE8fJT3GXwEOngsV7Zt27NXFoaoApmYm81iuXoPkFOJwJ8ERdknLPMO" crossorigin="anonymous"> <link rel="stylesheet" type="text/css" href="https://cdn.datatables.net/1.10.19/css/dataTables.bootstrap4.min.css"> <link rel="stylesheet" type="text/css" href="https://cdn.datatables.net/buttons/1.5.2/css/buttons.bootstrap4.min.css"> <link rel="stylesheet" type="text/css" href="https://cdn.datatables.net/buttons/1.5.2/css/buttons.dataTables.min.css"> </head> <body> <div class="container"> <div class="row"> <h2 class="mt-5"> rif_resistant Report </h2> </div> <div class="row"> <table class="table table-striped table-hover table-responsive-md"> <caption>Lineage Info</caption> <thead class="thead-light"> <tr> <th scope="col">Lineage</th> <th scope="col">Lineage support fraction</th> <th scope="col">Family</th> <th scope="col">RD</th> </tr> </thead> <tbody> <tr> <td>lineage2</td> <td>0.9940119760479041</td> <td>East-Asian</td> <td>RD105</td> </tr> <tr> <td>lineage2.2.2</td> <td>1.0</td> <td>East-Asian (Beijing)</td> <td>RD105;RD207</td> </tr> </tbody> </table> </div> <hr> <div class="row"> <h3 class="mb-2"> <a class="text-body" href="https://github.com/jodyphelan/TBProfiler" target="_blank" rel="noreferrer noopener">TB-Profiler</a> Drug Resistance Report </h3> </div> <div class="row"> <div class="col-md-12"> <p>TB-Profiler version 6.2.1 with database tbdb:82777ea (Sun Mar 17 01:14:00 2024 +0000)</p> </div> <div class="row"> <div class="col-md-12"> <table id="drug_resistance" class="table table-hover table-bordered table-striped table-responsive-md" cellspacing="0"> <caption class="mb-3 text-info"> <strong>Disclaimer</strong>: Drug resistance predictions are for <strong>Research Purposes Only</strong> and are produced by <a class="text-info" href="https://github.com/jodyphelan/TBProfiler" target="_blank" rel="noreferrer noopener">TB-Profiler</a>. </caption> <thead class="thead-light"> <tr> <th scope="col">Drug</th> <th scope="col">Resistance</th> <th scope="col">Supporting Mutations</th> </tr> </thead> <tr> <td>Isoniazid</td> <td>S</td> <td></td> </tr> <tr> <td>Rifampicin</td> <td>R</td> <td> <a target="_blank" href="https://explorer.sanbi.ac.za/gene?q=rpoB" rel="noreferrer noopener">rpoB</a> (1.0 p.Asp435Val) </td> </tr> <tr> <td>Ethambutol</td> <td>S</td> <td></td> </tr> <tr> <td>Pyrazinamide</td> <td>S</td> <td></td> </tr> <tr> <td>Streptomycin</td> <td>S</td> <td></td> </tr> <tr> <td>Ethionamide</td> <td>S</td> <td></td> </tr> <tr> <td>Fluoroquinolones</td> <td>S</td> <td></td> </tr> <tr> <td>Amikacin</td> <td>S</td> <td></td> </tr> <tr> <td>Capreomycin</td> <td>S</td> <td></td> </tr> <tr> <td>Kanamycin</td> <td>S</td> <td></td> </tr> <tr> <td>Para-aminosalicylic acid</td> <td>S</td> <td></td> </tr> <tr> <td>Linezolid</td> <td>S</td> <td></td> </tr> <tr> <td>Cycloserine</td> <td>S</td> <td></td> </tr> <tr> <td>Delamanid</td> <td>S</td> <td></td> </tr> <tr> <td>Clofazimine</td> <td>S</td> <td></td> </tr> <tr> <td>Bedaquiline</td> <td>S</td> <td></td> </tr> <tr> <td>Aminoglycosides</td> <td>S</td> <td></td> </tr> <tr> <td>Levofloxacin</td> <td>S</td> <td></td> </tr> <tr> <td>Moxifloxacin</td> <td>S</td> <td></td> </tr> <tr> <td>Pretomanid</td> <td>S</td> <td></td> </tr> </table> </div> </div> <script src="https://code.jquery.com/jquery-3.3.1.slim.min.js" integrity="sha384-q8i/X+965DzO0rT7abK41JStQIAqVgRVzpbzo5smXKp4YfRvH+8abtTE1Pi6jizo" crossorigin="anonymous"> </script> <script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.14.3/umd/popper.min.js" integrity="sha384-ZMP7rVo3mIykV+2+9J3UJ46jBk0WLaUAdn689aCwoqbBJiSnjAK/l8WvCWPIPm49" crossorigin="anonymous"> </script> <script 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