view test-data/rif_resistant_drug_resistance_report.html @ 3:42818629ec4c draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
author iuc
date Fri, 31 May 2024 20:06:49 +0000
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            <h2 class="mt-5">
                rif_resistant Report
            </h2>
        </div>
                <div class="row">
            <table class="table table-striped table-hover table-responsive-md">
                <caption>Lineage Info</caption>
                <thead class="thead-light">
                    <tr>
                        <th scope="col">Lineage</th>
                        <th scope="col">Lineage support fraction</th>
                        <th scope="col">Family</th>
                        <th scope="col">RD</th>
                    </tr>
                </thead>
                <tbody>
                    <tr>
                                                <td>lineage2</td>
                                                <td>0.9940119760479041</td>
                                                <td>East-Asian</td>
                                                <td>RD105</td>
                                            </tr>
                                        <tr>
                                                <td>lineage2.2.2</td>
                                                <td>1.0</td>
                                                <td>East-Asian (Beijing)</td>
                                                <td>RD105;RD207</td>
                                            </tr>
                                    </tbody>
            </table>
        </div>
                        <hr>
        <div class="row">
    <h3 class="mb-2">
        <a class="text-body" href="https://github.com/jodyphelan/TBProfiler" target="_blank"
            rel="noreferrer noopener">TB-Profiler</a>
        Drug Resistance Report
    </h3>
</div>
<div class="row">
    <div class="col-md-12">
        <p>TB-Profiler version 6.2.1 with
            database tbdb:82777ea (Sun Mar 17 01:14:00 2024 +0000)</p>
</div>
<div class="row">
    <div class="col-md-12">
        <table id="drug_resistance" class="table table-hover table-bordered table-striped table-responsive-md" cellspacing="0">
            <caption class="mb-3 text-info">
                <strong>Disclaimer</strong>:
                Drug resistance predictions are for <strong>Research Purposes Only</strong> and are produced by
                <a class="text-info" href="https://github.com/jodyphelan/TBProfiler" target="_blank"
                    rel="noreferrer noopener">TB-Profiler</a>.
            </caption>
            <thead class="thead-light">
                <tr>
                    <th scope="col">Drug</th>
                    <th scope="col">Resistance</th>
                    <th scope="col">Supporting Mutations</th>
                </tr>
            </thead>
                        <tr>
                <td>Isoniazid</td>
                <td>S</td>
                <td></td>
            </tr>
                        <tr>
                <td>Rifampicin</td>
                <td>R</td>
                <td>                    <a target="_blank" href="https://explorer.sanbi.ac.za/gene?q=rpoB"
                        rel="noreferrer noopener">rpoB</a>
                    (1.0 p.Asp435Val)
                    </td>
            </tr>
                        <tr>
                <td>Ethambutol</td>
                <td>S</td>
                <td></td>
            </tr>
                        <tr>
                <td>Pyrazinamide</td>
                <td>S</td>
                <td></td>
            </tr>
                        <tr>
                <td>Streptomycin</td>
                <td>S</td>
                <td></td>
            </tr>
                        <tr>
                <td>Ethionamide</td>
                <td>S</td>
                <td></td>
            </tr>
                        <tr>
                <td>Fluoroquinolones</td>
                <td>S</td>
                <td></td>
            </tr>
                        <tr>
                <td>Amikacin</td>
                <td>S</td>
                <td></td>
            </tr>
                        <tr>
                <td>Capreomycin</td>
                <td>S</td>
                <td></td>
            </tr>
                        <tr>
                <td>Kanamycin</td>
                <td>S</td>
                <td></td>
            </tr>
                        <tr>
                <td>Para-aminosalicylic acid</td>
                <td>S</td>
                <td></td>
            </tr>
                        <tr>
                <td>Linezolid</td>
                <td>S</td>
                <td></td>
            </tr>
                        <tr>
                <td>Cycloserine</td>
                <td>S</td>
                <td></td>
            </tr>
                        <tr>
                <td>Delamanid</td>
                <td>S</td>
                <td></td>
            </tr>
                        <tr>
                <td>Clofazimine</td>
                <td>S</td>
                <td></td>
            </tr>
                        <tr>
                <td>Bedaquiline</td>
                <td>S</td>
                <td></td>
            </tr>
                        <tr>
                <td>Aminoglycosides</td>
                <td>S</td>
                <td></td>
            </tr>
                        <tr>
                <td>Levofloxacin</td>
                <td>S</td>
                <td></td>
            </tr>
                        <tr>
                <td>Moxifloxacin</td>
                <td>S</td>
                <td></td>
            </tr>
                        <tr>
                <td>Pretomanid</td>
                <td>S</td>
                <td></td>
            </tr>
                    </table>
    </div>
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