diff test-data/TEs.gtf @ 0:838fb3a1678f draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/te_finder/ commit d86db11ee07ccc379667797b9124185ddfde1948
author iuc
date Mon, 08 Aug 2022 19:41:18 +0000
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/TEs.gtf	Mon Aug 08 19:41:18 2022 +0000
@@ -0,0 +1,65 @@
+S_3n6.54	RepeatMasker	similarity	1734	2492	 0.0	+	.	Target "Motif:Hornet-small" 1 759
+S_3n6.54	RepeatMasker	similarity	7002	7777	 0.0	+	.	Target "Motif:Hornet-small" 1 759
+S_3n6.54	RepeatMasker	similarity	8181	8457	23.4	+	.	Target "Motif:Frodo" 80 345
+S_3n6.54	RepeatMasker	similarity	8538	8693	16.0	+	.	Target "Motif:Frodo" 440 604
+U_32	RepeatMasker	similarity	1792	1954	27.0	-	.	Target "Motif:Hop2" 2645 2808
+U_32	RepeatMasker	similarity	3324	6310	 1.9	+	.	Target "Motif:Hornet" 1 2995
+U_32	RepeatMasker	similarity	9977	10735	 0.0	+	.	Target "Motif:Hornet-small" 1 759
+U_32	RepeatMasker	similarity	12284	12531	31.2	-	.	Target "Motif:HopAY267761" 2295 2542
+U_32	RepeatMasker	similarity	14704	14880	28.8	-	.	Target "Motif:SkippyFv" 26 209
+U_39	RepeatMasker	similarity	11436	13291	22.2	-	.	Target "Motif:Fot1Active" 45 1897
+U_39	RepeatMasker	similarity	13285	13331	14.9	-	.	Target "Motif:Fot1Active" 1859 1907
+U_39	RepeatMasker	similarity	13293	13473	23.7	-	.	Target "Motif:hAT210-short-Active" 248 428
+U_39	RepeatMasker	similarity	13616	13701	26.7	-	.	Target "Motif:hAT210-short-Active" 8 93
+U_39	RepeatMasker	similarity	13623	13732	25.7	-	.	Target "Motif:Fot1Active" 28 138
+U_39	RepeatMasker	similarity	13854	13914	 0.0	+	.	Target "Motif:Strider" 4 64
+U_9	RepeatMasker	similarity	3434	3621	 4.8	-	.	Target "Motif:Gollum-Fv4" 1 188
+U_9	RepeatMasker	similarity	27414	28067	 4.3	+	.	Target "Motif:Foxy2" 3 650
+U_9	RepeatMasker	similarity	34938	35293	29.1	-	.	Target "Motif:Hop2" 2561 2912
+U_9	RepeatMasker	similarity	35614	37453	33.2	-	.	Target "Motif:HopAY267761" 219 2046
+U_9	RepeatMasker	similarity	38327	38719	25.2	-	.	Target "Motif:hAT210-short-Active" 37 428
+U_9	RepeatMasker	similarity	38862	38992	20.3	+	.	Target "Motif:Tac" 1 131
+U_9	RepeatMasker	similarity	39383	39676	30.8	-	.	Target "Motif:SkippyFv" 1359 1652
+U_9	RepeatMasker	similarity	40797	40987	26.3	+	.	Target "Motif:ForetFv" 2916 3106
+U_9	RepeatMasker	similarity	41020	41950	33.9	-	.	Target "Motif:SkippyFv" 1055 2018
+U_9	RepeatMasker	similarity	42804	42939	25.4	-	.	Target "Motif:SkippyFv" 46 183
+U_9	RepeatMasker	similarity	42928	43066	20.7	+	.	Target "Motif:SkippyFv" 69 209
+U_9	RepeatMasker	similarity	42948	43062	20.4	-	.	Target "Motif:SkippyL34658" 225 340
+U_9	RepeatMasker	similarity	43223	43268	23.9	+	.	Target "Motif:SkippyFv" 405 450
+U_9	RepeatMasker	similarity	43642	44404	23.7	-	.	Target "Motif:ForetFv" 1065 1890
+U_9	RepeatMasker	similarity	44390	44567	24.2	+	.	Target "Motif:Foret1X65452" 671 851
+U_9	RepeatMasker	similarity	44568	45541	25.7	+	.	Target "Motif:Foret1X65452" 918 1884
+U_9	RepeatMasker	similarity	45662	46224	33.0	+	.	Target "Motif:SkippyFv" 1097 1659
+U_9	RepeatMasker	similarity	46220	47160	32.5	+	.	Target "Motif:SkippyFv" 1700 2667
+U_9	RepeatMasker	similarity	47444	47836	18.3	-	.	Target "Motif:hAT210-short-Active" 35 428
+U_9	RepeatMasker	similarity	49033	49119	32.2	-	.	Target "Motif:SkippyFv" 375 462
+U_9	RepeatMasker	similarity	49264	49427	27.6	-	.	Target "Motif:SkippyFv" 40 209
+U_9	RepeatMasker	similarity	49297	49455	34.2	+	.	Target "Motif:SkippyL34658" 254 419
+U_9	RepeatMasker	similarity	49455	49542	17.1	-	.	Target "Motif:SkippyFv" 83 172
+U_9	RepeatMasker	similarity	49543	49748	23.5	+	.	Target "Motif:SkippyFv" 1 211
+U_9	RepeatMasker	similarity	50626	51099	26.6	+	.	Target "Motif:SkippyFv" 1072 1548
+U_9	RepeatMasker	similarity	51139	51420	27.0	+	.	Target "Motif:SkippyFv" 2113 2393
+U_9	RepeatMasker	similarity	51695	52487	25.7	+	.	Target "Motif:SkippyFv" 2359 3232
+U_9	RepeatMasker	similarity	52486	52569	19.5	+	.	Target "Motif:SkippyFv" 3485 3568
+U_9	RepeatMasker	similarity	52633	52977	35.9	+	.	Target "Motif:SkippyFv" 1643 1987
+U_9	RepeatMasker	similarity	53105	53580	24.5	-	.	Target "Motif:ForetFv" 2593 3096
+U_9	RepeatMasker	similarity	55184	55388	21.5	+	.	Target "Motif:ForetFv" 2602 2807
+U_9	RepeatMasker	similarity	55385	55428	15.9	+	.	Target "Motif:Fot1Active" 37 80
+U_9	RepeatMasker	similarity	55405	55504	19.6	+	.	Target "Motif:hAT210-short-Active" 4 106
+U_9	RepeatMasker	similarity	55759	55825	12.9	+	.	Target "Motif:hAT210-short-Active" 363 428
+U_9	RepeatMasker	similarity	55782	55827	19.6	-	.	Target "Motif:Fot1Active" 35 80
+U_9	RepeatMasker	similarity	55870	56016	25.0	-	.	Target "Motif:ForetFv" 1789 1932
+U_9	RepeatMasker	similarity	55872	55997	24.6	-	.	Target "Motif:Foret1X65452" 1046 1173
+U_9	RepeatMasker	similarity	56922	58023	24.3	+	.	Target "Motif:ForetFv" 633 1706
+U_9	RepeatMasker	similarity	57179	58049	21.8	+	.	Target "Motif:Foret1X65452" 125 976
+U_9	RepeatMasker	similarity	58036	58425	37.8	+	.	Target "Motif:SkippyL34658" 2270 2664
+U_9	RepeatMasker	similarity	58950	59186	34.9	-	.	Target "Motif:SkippyFv" 4401 4641
+U_9	RepeatMasker	similarity	60402	60921	32.0	-	.	Target "Motif:SkippyFv" 3576 4101
+U_9	RepeatMasker	similarity	60936	61628	27.4	-	.	Target "Motif:SkippyFv" 2785 3479
+U_9	RepeatMasker	similarity	61657	62079	25.1	+	.	Target "Motif:hAT210-short-Active" 9 432
+U_9	RepeatMasker	similarity	62079	62351	26.4	-	.	Target "Motif:SkippyFv" 2493 2774
+U_9	RepeatMasker	similarity	63029	63201	38.4	-	.	Target "Motif:SkippyL34658" 318 503
+U_9	RepeatMasker	similarity	63210	63598	18.8	-	.	Target "Motif:hAT210-short-Active" 11 401
+U_9	RepeatMasker	similarity	63622	63720	21.2	+	.	Target "Motif:SkippyFv" 110 209
+U_9	RepeatMasker	similarity	64067	64493	19.9	+	.	Target "Motif:hAT210-short-Active" 1 428
+U_9	RepeatMasker	similarity	64560	72405	 0.0	-	.	Target "Motif:SkippyL34658" 1 7846