Mercurial > repos > iuc > tetoolkit_tetranscripts
view test-data/te.gtf @ 0:2dfbcb88d16a draft
"planemo upload for repository https://github.com/mhammell-laboratory/TEtranscripts commit 0afd89b76ba658b8bc9faa1463a1aa160ddb2339"
| author | iuc |
|---|---|
| date | Wed, 13 May 2020 12:57:29 -0400 |
| parents | |
| children |
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chr4 dm3_rmsk exon 343119 348355 . + . gene_id "Stalker2_I"; transcript_id "Stalker2_I_dup2"; family_id "Gypsy"; class_id "LTR"; chr4 dm3_rmsk exon 954243 955152 . - . gene_id "DMCR1A"; transcript_id "DMCR1A_dup25"; family_id "CR1"; class_id "LINE"; chr4 dm3_rmsk exon 1281301 1285200 . - . gene_id "TART"; transcript_id "TART_dup3"; family_id "telomeric"; class_id "LINE"; chr4 dm3_rmsk exon 1298748 1302519 . - . gene_id "HETA"; transcript_id "HETA_dup2"; family_id "telomeric"; class_id "LINE"; chr4 dm3_rmsk exon 1325146 1336223 . - . gene_id "TART"; transcript_id "TART_dup10"; family_id "telomeric"; class_id "LINE"; chr4 dm3_rmsk exon 1338128 1349150 . - . gene_id "TART"; transcript_id "TART_dup15"; family_id "telomeric"; class_id "LINE"; chrU dm3_rmsk exon 191398 191854 . + . gene_id "BURDOCK_I"; transcript_id "BURDOCK_I_dup3"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 276311 276724 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup5"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 276725 281011 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup7"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 357869 358422 . - . gene_id "DMCR1A"; transcript_id "DMCR1A_dup58"; family_id "CR1"; class_id "LINE"; chrU dm3_rmsk exon 444361 445162 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup10"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 445163 445576 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup8"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 560147 564265 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup5"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 585727 586749 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup7"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 923349 923833 . - . gene_id "T412LTR"; transcript_id "T412LTR"; family_id "LTR"; class_id "LTR"; chrU dm3_rmsk exon 923724 930674 . - . gene_id "DM412"; transcript_id "DM412_dup20"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 930358 930842 . - . gene_id "T412LTR"; transcript_id "T412LTR_dup1"; family_id "LTR"; class_id "LTR"; chrU dm3_rmsk exon 977434 977847 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup9"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 977848 984017 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup11"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 1068318 1074427 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup12"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 1145421 1151606 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup14"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 1183521 1184031 . - . gene_id "DNAREP1_DM"; transcript_id "DNAREP1_DM_dup737"; family_id "Penelope"; class_id "LINE"; chrU dm3_rmsk exon 1210262 1212598 . - . gene_id "Gypsy12_LTR"; transcript_id "Gypsy12_LTR_dup7"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 1217990 1220370 . - . gene_id "Gypsy12_LTR"; transcript_id "Gypsy12_LTR_dup8"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 1223765 1226146 . - . gene_id "Gypsy12_LTR"; transcript_id "Gypsy12_LTR_dup9"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 1293346 1293758 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup12"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 1293759 1298196 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup15"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 1308708 1311586 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup17"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 1420117 1423754 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup22"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 1443400 1449972 . - . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup15"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 1572762 1573180 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup24"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 1722014 1722692 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup27"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 1781498 1782154 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup10"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 1805831 1807913 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup29"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 1881961 1886692 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup29"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 1886693 1887052 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup16"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 1896226 1896818 . + . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup28"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 1902819 1903411 . + . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup29"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 2048219 2050481 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup35"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 2051056 2057160 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup36"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 2092493 2094999 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup152"; family_id "CR1"; class_id "LINE"; chrU dm3_rmsk exon 2247039 2253619 . + . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup25"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 2328705 2329297 . + . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup30"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 2472019 2472186 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup48"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 2581052 2581507 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup31"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 2691771 2694411 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup51"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 3096181 3099337 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup53"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 3312718 3313508 . + . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup27"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 3371327 3372261 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup61"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 3503665 3504199 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup69"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 3578157 3578336 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup4"; family_id "Copia"; class_id "LTR"; chrU dm3_rmsk exon 3625425 3626082 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup20"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 3770053 3770709 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup22"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 3777432 3777737 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup40"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 3837334 3839552 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup76"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 4015850 4017758 . + . gene_id "TART_B1"; transcript_id "TART_B1_dup3"; family_id "telomeric"; class_id "LINE"; chrU dm3_rmsk exon 4116367 4117555 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup48"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 4126825 4127440 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup28"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 4236892 4237987 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup83"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 4345607 4346049 . - . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup83"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 4838081 4838523 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup59"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 5189745 5189910 . - . gene_id "DMCR1A"; transcript_id "DMCR1A_dup237"; family_id "CR1"; class_id "LINE"; chrU dm3_rmsk exon 5190657 5191171 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup93"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 5475097 5476840 . - . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup62"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 5524199 5524856 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup36"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 5553424 5553622 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup8"; family_id "Copia"; class_id "LTR"; chrU dm3_rmsk exon 5690556 5690753 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup9"; family_id "Copia"; class_id "LTR"; chrU dm3_rmsk exon 5767489 5772171 . + . gene_id "TART_B1"; transcript_id "TART_B1_dup7"; family_id "telomeric"; class_id "LINE"; chrU dm3_rmsk exon 5951132 5951685 . - . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup99"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 5977542 5978155 . - . gene_id "DM412B_LTR"; transcript_id "DM412B_LTR_dup4"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 6001421 6002602 . - . gene_id "DOC3_DM"; transcript_id "DOC3_DM_dup51"; family_id "Jockey"; class_id "LINE"; chrU dm3_rmsk exon 6086408 6086991 . - . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup45"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 6179002 6180525 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup103"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 6224902 6228880 . + . gene_id "Gypsy6_I"; transcript_id "Gypsy6_I_dup42"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 6309683 6309880 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup12"; family_id "Copia"; class_id "LTR"; chrU dm3_rmsk exon 6473514 6473693 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup13"; family_id "Copia"; class_id "LTR"; chrU dm3_rmsk exon 6628271 6628930 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup41"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 6677331 6677601 . + . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup70"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 6731465 6734022 . + . gene_id "TART_B1"; transcript_id "TART_B1_dup11"; family_id "telomeric"; class_id "LINE"; chrU dm3_rmsk exon 6945365 6947093 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup111"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 6987604 6988260 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup42"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 7126511 7127835 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup114"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 7264880 7267505 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup116"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 7308561 7309535 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup119"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 7329574 7329736 . - . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup81"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 7332248 7332896 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup122"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 7332960 7334528 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup124"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 7487018 7487473 . - . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup111"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 7519432 7520276 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup127"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 7748631 7750155 . + . gene_id "Gypsy12_LTR"; transcript_id "Gypsy12_LTR_dup78"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 7828761 7829083 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup132"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 7881322 7881911 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup48"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 7907279 7907794 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup135"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 8033433 8034022 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup51"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 8137658 8137976 . + . gene_id "TIRANT_I"; transcript_id "TIRANT_I_dup20"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 8244488 8244933 . - . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup113"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 8371984 8372439 . - . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup115"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 8374715 8375214 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup144"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 8427074 8427271 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup15"; family_id "Copia"; class_id "LTR"; chrU dm3_rmsk exon 8523917 8524479 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup55"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 8639171 8640550 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup91"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 8647157 8647861 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup306"; family_id "CR1"; class_id "LINE"; chrU dm3_rmsk exon 8711610 8712130 . + . gene_id "Gypsy_DS"; transcript_id "Gypsy_DS_dup11"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 8720854 8721046 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup107"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 8721047 8721460 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup29"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 8731513 8731702 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup17"; family_id "Copia"; class_id "LTR"; chrU dm3_rmsk exon 8772055 8772757 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup157"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 8809472 8809792 . - . gene_id "TIRANT_I"; transcript_id "TIRANT_I_dup23"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 8899308 8899741 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup62"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 9007353 9007909 . - . gene_id "Stalker2_I"; transcript_id "Stalker2_I_dup42"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 9013996 9014409 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup30"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 9014410 9014542 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup110"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 9043750 9044112 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup31"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 9044113 9044332 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup111"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 9194346 9194700 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup63"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 9280618 9281548 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup176"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 9409569 9410084 . + . gene_id "T412LTR"; transcript_id "T412LTR_dup4"; family_id "LTR"; class_id "LTR"; chrU dm3_rmsk exon 9409769 9410183 . + . gene_id "DM412"; transcript_id "DM412_dup60"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 9423981 9424974 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup181"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 9466785 9467907 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup183"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 9476659 9477397 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup68"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 9480221 9480307 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup69"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 9549357 9549872 . + . gene_id "DM412B_LTR"; transcript_id "DM412B_LTR_dup7"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 9693207 9693297 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup120"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 9693298 9693711 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup32"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 9841738 9842180 . - . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup125"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 9890510 9891080 . - . gene_id "DM412B_LTR"; transcript_id "DM412B_LTR_dup9"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 9917593 9917947 . - . gene_id "DM412"; transcript_id "DM412_dup62"; family_id "Gypsy"; class_id "LTR"; chrU dm3_rmsk exon 9917630 9918110 . - . gene_id "T412LTR"; transcript_id "T412LTR_dup5"; family_id "LTR"; class_id "LTR"; chrU dm3_rmsk exon 9931601 9932153 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup196"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 10820 12794 . + . gene_id "TAHRE"; transcript_id "TAHRE_dup104"; family_id "telomeric"; class_id "LINE"; chrX dm3_rmsk exon 19112 19196 . + . gene_id "TAHRE"; transcript_id "TAHRE_dup105"; family_id "telomeric"; class_id "LINE"; chrX dm3_rmsk exon 189895 197508 . - . gene_id "DM412"; transcript_id "DM412_dup64"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 445510 453014 . + . gene_id "DM412"; transcript_id "DM412_dup65"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 706355 706755 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup33"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 706756 710761 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup122"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 927440 935019 . + . gene_id "DM412"; transcript_id "DM412_dup66"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 1251868 1253278 . - . gene_id "IVK_DM"; transcript_id "IVK_DM_dup17"; family_id "I"; class_id "LINE"; chrX dm3_rmsk exon 1825142 1831621 . - . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup57"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 1849398 1854645 . - . gene_id "Stalker2_I"; transcript_id "Stalker2_I_dup49"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 3073073 3079644 . + . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup58"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 3387608 3395852 . - . gene_id "ROO_I"; transcript_id "ROO_I_dup129"; family_id "Pao"; class_id "LTR"; chrX dm3_rmsk exon 3395853 3396280 . - . gene_id "ROO_LTR"; transcript_id "ROO_LTR_dup45"; family_id "Pao"; class_id "LTR"; chrX dm3_rmsk exon 3495547 3495974 . - . gene_id "ROO_LTR"; transcript_id "ROO_LTR_dup47"; family_id "Pao"; class_id "LTR"; chrX dm3_rmsk exon 3508115 3508542 . - . gene_id "ROO_LTR"; transcript_id "ROO_LTR_dup49"; family_id "Pao"; class_id "LTR"; chrX dm3_rmsk exon 3880951 3881464 . - . gene_id "T412LTR"; transcript_id "T412LTR_dup6"; family_id "LTR"; class_id "LTR"; chrX dm3_rmsk exon 3881355 3888326 . - . gene_id "DM412"; transcript_id "DM412_dup67"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 3888013 3888526 . - . gene_id "T412LTR"; transcript_id "T412LTR_dup7"; family_id "LTR"; class_id "LTR"; chrX dm3_rmsk exon 4051980 4052393 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup36"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 4052394 4058543 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup124"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 4722487 4728965 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup197"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 5285684 5286482 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup126"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 5286483 5286896 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup39"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 5418929 5420968 . + . gene_id "DM412"; transcript_id "DM412_dup68"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 5420945 5422734 . + . gene_id "DM412"; transcript_id "DM412_dup69"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 6065672 6066329 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup74"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 6066330 6072388 . - . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup125"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 6072389 6073046 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup75"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 6340461 6344677 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup128"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 6344678 6345091 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup41"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 9693025 9699191 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup129"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 9699192 9699605 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup43"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 9989251 9989664 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup44"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 9989665 9994170 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup130"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 10032303 10032783 . + . gene_id "T412LTR"; transcript_id "T412LTR_dup8"; family_id "LTR"; class_id "LTR"; chrX dm3_rmsk exon 10032470 10039372 . + . gene_id "DM412"; transcript_id "DM412_dup70"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 10039263 10039743 . + . gene_id "T412LTR"; transcript_id "T412LTR_dup9"; family_id "LTR"; class_id "LTR"; chrX dm3_rmsk exon 10419160 10419572 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup46"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 10419573 10425740 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup132"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 11206576 11213009 . - . gene_id "Stalker2_I"; transcript_id "Stalker2_I_dup51"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 11527919 11534087 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup133"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 11534088 11534501 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup50"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 12608970 12609026 . - . gene_id "ROO_I"; transcript_id "ROO_I_dup330"; family_id "Pao"; class_id "LTR"; chrX dm3_rmsk exon 14052861 14056866 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup135"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 14056867 14057280 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup52"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 14446249 14452816 . - . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup59"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 19030640 19031120 . + . gene_id "T412LTR"; transcript_id "T412LTR_dup10"; family_id "LTR"; class_id "LTR"; chrX dm3_rmsk exon 19030807 19035865 . + . gene_id "DM412"; transcript_id "DM412_dup71"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 19037021 19037501 . + . gene_id "T412LTR"; transcript_id "T412LTR_dup11"; family_id "LTR"; class_id "LTR"; chrX dm3_rmsk exon 19691843 19698056 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup198"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 19927404 19927817 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup57"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 19927818 19929771 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup140"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 21329782 21335151 . - . gene_id "IVK_DM"; transcript_id "IVK_DM_dup19"; family_id "I"; class_id "LINE"; chrX dm3_rmsk exon 21395076 21395730 . - . gene_id "ROO_I"; transcript_id "ROO_I_dup450"; family_id "Pao"; class_id "LTR"; chrX dm3_rmsk exon 21421820 21423555 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup146"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 21423556 21423969 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup60"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 21512181 21519806 . - . gene_id "DM412"; transcript_id "DM412_dup74"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 21519811 21524347 . - . gene_id "Stalker2_I"; transcript_id "Stalker2_I_dup54"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 21547758 21549716 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup201"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 21549795 21551471 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup202"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 21552015 21558368 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup204"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 21580844 21582367 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup207"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 21586806 21587822 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup208"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 21604473 21610607 . - . gene_id "Gypsy6_I"; transcript_id "Gypsy6_I_dup71"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 21615912 21617588 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup210"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 21642451 21643491 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup213"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 21644907 21645298 . - . gene_id "Gypsy6_I"; transcript_id "Gypsy6_I_dup76"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 22022378 22022791 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup62"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 22022792 22027540 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup147"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 22175530 22176216 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup150"; family_id "Gypsy"; class_id "LTR"; chrX dm3_rmsk exon 22176217 22176630 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup66"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 2112686 2119254 . - . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup63"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 2565593 2566006 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup74"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 2566007 2569028 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup159"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 2772653 2773066 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup76"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 2773067 2776969 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup161"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 4662398 4668884 . - . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup64"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 4973719 4973842 . - . gene_id "S2_DM"; transcript_id "S2_DM_dup7"; family_id "Tc1"; class_id "DNA"; chr2L dm3_rmsk exon 4973823 4973927 . - . gene_id "S2_DM"; transcript_id "S2_DM_dup8"; family_id "Tc1"; class_id "DNA"; chr2L dm3_rmsk exon 7977135 7977547 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup78"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 7977548 7983640 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup164"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 8594934 8601102 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup165"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 8601103 8601516 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup81"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 10593415 10599983 . - . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup65"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 10876598 10877011 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup82"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 10877012 10883182 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup166"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 12067385 12067798 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup84"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 12067799 12073965 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup167"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 12781859 12782516 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup77"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 12782517 12788586 . - . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup128"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 12788587 12789244 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup78"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 13449518 13450176 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup79"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 13450177 13456236 . - . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup129"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 13456237 13456895 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup80"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 14984971 14991457 . + . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup66"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 15586465 15586878 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup86"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 15586879 15593045 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup168"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 15683783 15684440 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup81"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 15684441 15686758 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup130"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 15718780 15719437 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup82"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 15719438 15721755 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup131"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 15726912 15727569 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup83"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 16154206 16160372 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup169"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 16160373 16160787 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup89"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 17144903 17151477 . - . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup67"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 19147425 19147838 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup90"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 19147839 19153988 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup170"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 19658198 19664770 . - . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup68"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 20156132 20156835 . - . gene_id "POGO"; transcript_id "POGO_dup19"; family_id "Pogo"; class_id "DNA"; chr2L dm3_rmsk exon 20157736 20158439 . - . gene_id "POGO"; transcript_id "POGO_dup20"; family_id "Pogo"; class_id "DNA"; chr2L dm3_rmsk exon 20835864 20836522 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup84"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 21406236 21406838 . - . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup123"; family_id "Gypsy"; class_id "LTR"; chr2L dm3_rmsk exon 22786818 22788162 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup218"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 29494 29691 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup23"; family_id "Copia"; class_id "LTR"; chr2R dm3_rmsk exon 33561 33757 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup24"; family_id "Copia"; class_id "LTR"; chr2R dm3_rmsk exon 37627 37795 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup25"; family_id "Copia"; class_id "LTR"; chr2R dm3_rmsk exon 62686 66864 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup221"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 290249 291158 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup460"; family_id "CR1"; class_id "LINE"; chr2R dm3_rmsk exon 320405 321649 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup138"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 333623 334869 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup142"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 352453 354318 . - . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup144"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 1208416 1208645 . - . gene_id "DNAREP1_DM"; transcript_id "DNAREP1_DM_dup2748"; family_id "Penelope"; class_id "LINE"; chr2R dm3_rmsk exon 1268080 1274651 . + . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup84"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 1275172 1281362 . - . gene_id "Stalker2_I"; transcript_id "Stalker2_I_dup63"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 1316559 1318957 . - . gene_id "DMCR1A"; transcript_id "DMCR1A_dup536"; family_id "CR1"; class_id "LINE"; chr2R dm3_rmsk exon 1469711 1470864 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup547"; family_id "CR1"; class_id "LINE"; chr2R dm3_rmsk exon 2204690 2208130 . - . gene_id "Copia2_I"; transcript_id "Copia2_I_dup101"; family_id "Copia"; class_id "LTR"; chr2R dm3_rmsk exon 2218252 2224794 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup227"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 2254749 2254934 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup27"; family_id "Copia"; class_id "LTR"; chr2R dm3_rmsk exon 2261767 2261952 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup28"; family_id "Copia"; class_id "LTR"; chr2R dm3_rmsk exon 2840244 2846730 . + . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup86"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 3150161 3156328 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup210"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 3156329 3156741 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup106"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 3994550 3994963 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup107"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 3994964 3998866 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup211"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 7304683 7305764 . + . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup88"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 9616211 9622776 . + . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup89"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 10972539 10972952 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup110"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 10972953 10979116 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup215"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 15957285 15958055 . - . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup90"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 17039987 17040847 . + . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup94"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 19417152 19424670 . - . gene_id "DM412"; transcript_id "DM412_dup82"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 19801877 19809443 . - . gene_id "DM412"; transcript_id "DM412_dup83"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 20034646 20035128 . - . gene_id "T412LTR"; transcript_id "T412LTR_dup13"; family_id "LTR"; class_id "LTR"; chr2R dm3_rmsk exon 20035019 20041999 . - . gene_id "DM412"; transcript_id "DM412_dup84"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 20041684 20042166 . - . gene_id "T412LTR"; transcript_id "T412LTR_dup14"; family_id "LTR"; class_id "LTR"; chr2R dm3_rmsk exon 20064814 20072241 . - . gene_id "DM412"; transcript_id "DM412_dup85"; family_id "Gypsy"; class_id "LTR"; chr2R dm3_rmsk exon 20535163 20542666 . - . gene_id "DM412"; transcript_id "DM412_dup86"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 403154 409321 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup216"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 409322 409735 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup115"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 1047407 1054568 . - . gene_id "DM412"; transcript_id "DM412_dup87"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 1054555 1055161 . - . gene_id "DM412"; transcript_id "DM412_dup88"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 1219647 1220216 . + . gene_id "DM412"; transcript_id "DM412_dup89"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 1220203 1227326 . + . gene_id "DM412"; transcript_id "DM412_dup90"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 4328954 4335856 . + . gene_id "DM412"; transcript_id "DM412_dup91"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 5292308 5292965 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup97"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 5292966 5299027 . - . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup149"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 5299028 5299685 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup98"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 7370471 7370884 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup117"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 7370885 7371685 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup217"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 7787281 7793447 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup219"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 7793448 7793861 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup120"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 7880360 7881722 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup228"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 9070082 9070595 . + . gene_id "T412LTR"; transcript_id "T412LTR_dup17"; family_id "LTR"; class_id "LTR"; chr3L dm3_rmsk exon 9070282 9077180 . + . gene_id "DM412"; transcript_id "DM412_dup92"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 9077071 9077584 . + . gene_id "T412LTR"; transcript_id "T412LTR_dup18"; family_id "LTR"; class_id "LTR"; chr3L dm3_rmsk exon 9123704 9127416 . - . gene_id "DM412"; transcript_id "DM412_dup93"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 9526908 9534410 . + . gene_id "DM412"; transcript_id "DM412_dup94"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 11557936 11565503 . + . gene_id "DM412"; transcript_id "DM412_dup95"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 13260258 13260342 . - . gene_id "ROO_I"; transcript_id "ROO_I_dup1029"; family_id "Pao"; class_id "LTR"; chr3L dm3_rmsk exon 14818714 14825517 . + . gene_id "Stalker2_I"; transcript_id "Stalker2_I_dup66"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 15418565 15419184 . + . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup96"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 16609665 16610078 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup121"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 16610079 16614098 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup220"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 17510135 17517635 . - . gene_id "DM412"; transcript_id "DM412_dup96"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 17912044 17912904 . - . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup97"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 18704339 18709588 . - . gene_id "Stalker2_I"; transcript_id "Stalker2_I_dup67"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 19813441 19813921 . - . gene_id "T412LTR"; transcript_id "T412LTR_dup19"; family_id "LTR"; class_id "LTR"; chr3L dm3_rmsk exon 19813812 19820779 . - . gene_id "DM412"; transcript_id "DM412_dup97"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 19820466 19820946 . - . gene_id "T412LTR"; transcript_id "T412LTR_dup20"; family_id "LTR"; class_id "LTR"; chr3L dm3_rmsk exon 20327933 20328517 . - . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup132"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 20334190 20334783 . - . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup133"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 20583219 20583700 . + . gene_id "DM412B_LTR"; transcript_id "DM412B_LTR_dup12"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 21236884 21244408 . + . gene_id "DM412"; transcript_id "DM412_dup98"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 22754546 22759914 . + . gene_id "IVK_DM"; transcript_id "IVK_DM_dup40"; family_id "I"; class_id "LINE"; chr3L dm3_rmsk exon 22797386 22803956 . + . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup99"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 22806024 22812083 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup158"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 22983017 22983430 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup124"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 22983431 22989521 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup228"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 23150298 23150955 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup106"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 23150956 23157025 . - . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup159"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 23157026 23157683 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup107"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 23159066 23159723 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup108"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 23159724 23165793 . - . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup160"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 23165794 23166451 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup109"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 23296135 23297324 . - . gene_id "DMRT1B"; transcript_id "DMRT1B_dup239"; family_id "R1"; class_id "LINE"; chr3L dm3_rmsk exon 23309691 23310346 . - . gene_id "PROTOP_B"; transcript_id "PROTOP_B_dup304"; family_id "P"; class_id "DNA"; chr3L dm3_rmsk exon 23365825 23372408 . + . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup100"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 23378792 23385373 . - . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup101"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 23415043 23418949 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup230"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 23464990 23466103 . + . gene_id "Gypsy3_I"; transcript_id "Gypsy3_I_dup62"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 23492288 23496191 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup235"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 23566127 23571153 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup236"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 23665822 23667053 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup239"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 23667051 23667540 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup240"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 23771950 23772323 . + . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup171"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 23800784 23802508 . - . gene_id "DMCR1A"; transcript_id "DMCR1A_dup669"; family_id "CR1"; class_id "LINE"; chr3L dm3_rmsk exon 23877394 23877591 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup29"; family_id "Copia"; class_id "LTR"; chr3L dm3_rmsk exon 23881877 23882073 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup30"; family_id "Copia"; class_id "LTR"; chr3L dm3_rmsk exon 23906997 23908404 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup691"; family_id "CR1"; class_id "LINE"; chr3L dm3_rmsk exon 23968584 23969241 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup115"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 24131239 24137265 . - . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup168"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 24190735 24191392 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup119"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 24195937 24196594 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup120"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 24265766 24272339 . + . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup111"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 24402882 24408921 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup174"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 24467900 24472283 . + . gene_id "Gypsy6_I"; transcript_id "Gypsy6_I_dup114"; family_id "Gypsy"; class_id "LTR"; chr3L dm3_rmsk exon 24512256 24513726 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup746"; family_id "CR1"; class_id "LINE"; chr3R dm3_rmsk exon 85005 91064 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup175"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 3557455 3562699 . + . gene_id "Stalker2_I"; transcript_id "Stalker2_I_dup82"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 3917683 3919320 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup276"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 3919321 3919734 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup135"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 4694573 4694985 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup136"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 4694986 4697176 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup277"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 4723998 4724411 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup138"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 4724412 4724498 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup279"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 5130941 5137128 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup243"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 6022729 6023142 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup140"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 6023143 6027676 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup283"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 6167799 6173891 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup285"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 6173892 6174304 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup143"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 6892543 6896548 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup287"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 6896549 6896962 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup145"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 8294200 8294397 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup31"; family_id "Copia"; class_id "LTR"; chr3R dm3_rmsk exon 8295389 8295558 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup32"; family_id "Copia"; class_id "LTR"; chr3R dm3_rmsk exon 8299366 8299535 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup35"; family_id "Copia"; class_id "LTR"; chr3R dm3_rmsk exon 8300958 8301127 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup37"; family_id "Copia"; class_id "LTR"; chr3R dm3_rmsk exon 8302550 8302719 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup39"; family_id "Copia"; class_id "LTR"; chr3R dm3_rmsk exon 8303884 8304053 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup40"; family_id "Copia"; class_id "LTR"; chr3R dm3_rmsk exon 8305497 8305666 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup42"; family_id "Copia"; class_id "LTR"; chr3R dm3_rmsk exon 8308326 8308495 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup45"; family_id "Copia"; class_id "LTR"; chr3R dm3_rmsk exon 8313462 8313631 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup48"; family_id "Copia"; class_id "LTR"; chr3R dm3_rmsk exon 8316291 8316460 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup51"; family_id "Copia"; class_id "LTR"; chr3R dm3_rmsk exon 8325323 8325492 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup53"; family_id "Copia"; class_id "LTR"; chr3R dm3_rmsk exon 10928275 10928755 . - . gene_id "T412LTR"; transcript_id "T412LTR_dup21"; family_id "LTR"; class_id "LTR"; chr3R dm3_rmsk exon 10934859 10935305 . - . gene_id "DM412"; transcript_id "DM412_dup107"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 10934992 10935472 . - . gene_id "T412LTR"; transcript_id "T412LTR_dup22"; family_id "LTR"; class_id "LTR"; chr3R dm3_rmsk exon 11426941 11427422 . - . gene_id "T412LTR"; transcript_id "T412LTR_dup23"; family_id "LTR"; class_id "LTR"; chr3R dm3_rmsk exon 11427313 11434238 . - . gene_id "DM412"; transcript_id "DM412_dup108"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 11433924 11434405 . - . gene_id "T412LTR"; transcript_id "T412LTR_dup24"; family_id "LTR"; class_id "LTR"; chr3R dm3_rmsk exon 13334998 13342488 . + . gene_id "DM412"; transcript_id "DM412_dup109"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 13859073 13865652 . + . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup114"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 16340057 16340908 . + . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup116"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 19677352 19683927 . - . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup117"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 22043124 22047018 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup289"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 22047019 22047431 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup147"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 22384740 22390952 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup245"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 22966292 22973844 . + . gene_id "DM412"; transcript_id "DM412_dup110"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 23701891 23708060 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup290"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 24425799 24425915 . - . gene_id "LINEJ1_DM"; transcript_id "LINEJ1_DM_dup144"; family_id "Jockey"; class_id "LINE"; chr3R dm3_rmsk exon 24590095 24596647 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup246"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 26201316 26208883 . + . gene_id "DM412"; transcript_id "DM412_dup111"; family_id "Gypsy"; class_id "LTR"; chr3R dm3_rmsk exon 27495986 27496134 . - . gene_id "DNAREP1_DM"; transcript_id "DNAREP1_DM_dup4623"; family_id "Penelope"; class_id "LINE"; chrXHet dm3_rmsk exon 92917 93113 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup55"; family_id "Copia"; class_id "LTR"; chrXHet dm3_rmsk exon 98805 99001 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup56"; family_id "Copia"; class_id "LTR"; chrXHet dm3_rmsk exon 104691 104887 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup57"; family_id "Copia"; class_id "LTR"; chrXHet dm3_rmsk exon 110576 110772 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup58"; family_id "Copia"; class_id "LTR"; chrXHet dm3_rmsk exon 116461 116657 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup59"; family_id "Copia"; class_id "LTR"; chrXHet dm3_rmsk exon 122349 122545 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup60"; family_id "Copia"; class_id "LTR"; chrXHet dm3_rmsk exon 128221 128417 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup61"; family_id "Copia"; class_id "LTR"; chrXHet dm3_rmsk exon 132522 132719 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup62"; family_id "Copia"; class_id "LTR"; chrYHet dm3_rmsk exon 79707 80691 . - . gene_id "DMCR1A"; transcript_id "DMCR1A_dup771"; family_id "CR1"; class_id "LINE"; chrYHet dm3_rmsk exon 181984 182181 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup64"; family_id "Copia"; class_id "LTR"; chrYHet dm3_rmsk exon 314592 317225 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup252"; family_id "Gypsy"; class_id "LTR"; chrYHet dm3_rmsk exon 321875 324507 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup254"; family_id "Gypsy"; class_id "LTR"; chrYHet dm3_rmsk exon 338562 339218 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup134"; family_id "Gypsy"; class_id "LTR"; chr2LHet dm3_rmsk exon 22078 22201 . + . gene_id "DNAREP1_DM"; transcript_id "DNAREP1_DM_dup4748"; family_id "Penelope"; class_id "LINE"; chr2LHet dm3_rmsk exon 237708 243077 . + . gene_id "IVK_DM"; transcript_id "IVK_DM_dup49"; family_id "I"; class_id "LINE"; chr2LHet dm3_rmsk exon 319022 322935 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup263"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 321363 324230 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup266"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 396896 397012 . - . gene_id "HELENA"; transcript_id "HELENA_dup3"; family_id "Jockey"; class_id "LINE"; chr2RHet dm3_rmsk exon 401410 401722 . + . gene_id "Gypsy_I"; transcript_id "Gypsy_I_dup117"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 412537 413738 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup825"; family_id "CR1"; class_id "LINE"; chr2RHet dm3_rmsk exon 422796 423997 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup827"; family_id "CR1"; class_id "LINE"; chr2RHet dm3_rmsk exon 579626 585667 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup272"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 711188 717988 . - . gene_id "Stalker2_I"; transcript_id "Stalker2_I_dup87"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 845370 850300 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup278"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 906168 912510 . + . gene_id "TABOR_I"; transcript_id "TABOR_I_dup14"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 1070316 1070759 . + . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup200"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 1096471 1097123 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup138"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 1097124 1102831 . - . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup193"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 1103201 1103853 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup139"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 1103854 1109562 . - . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup195"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 1109932 1110584 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup140"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 1430601 1435981 . - . gene_id "IVK_DM"; transcript_id "IVK_DM_dup57"; family_id "I"; class_id "LINE"; chr2RHet dm3_rmsk exon 1578556 1579063 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup142"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 1595646 1595867 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup143"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 1662407 1663532 . - . gene_id "DMCR1A"; transcript_id "DMCR1A_dup925"; family_id "CR1"; class_id "LINE"; chr2RHet dm3_rmsk exon 1671374 1671829 . - . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup207"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 1732318 1732515 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup66"; family_id "Copia"; class_id "LTR"; chr2RHet dm3_rmsk exon 1756050 1757426 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup931"; family_id "CR1"; class_id "LINE"; chr2RHet dm3_rmsk exon 1759026 1763079 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup283"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 1766744 1767869 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup934"; family_id "CR1"; class_id "LINE"; chr2RHet dm3_rmsk exon 1829805 1830461 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup148"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 1937252 1938427 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup287"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 2126851 2127507 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup150"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 2205238 2211812 . + . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup155"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 2266184 2266380 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup959"; family_id "CR1"; class_id "LINE"; chr2RHet dm3_rmsk exon 2266388 2267371 . - . gene_id "Gypsy12_LTR"; transcript_id "Gypsy12_LTR_dup172"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 2271200 2271396 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup960"; family_id "CR1"; class_id "LINE"; chr2RHet dm3_rmsk exon 2576017 2576497 . - . gene_id "T412LTR"; transcript_id "T412LTR_dup29"; family_id "LTR"; class_id "LTR"; chr2RHet dm3_rmsk exon 2576388 2583339 . - . gene_id "DM412"; transcript_id "DM412_dup120"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 2583026 2583506 . - . gene_id "T412LTR"; transcript_id "T412LTR_dup30"; family_id "LTR"; class_id "LTR"; chr2RHet dm3_rmsk exon 2620135 2626569 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup294"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 2649149 2649806 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup151"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 2876877 2877347 . + . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup214"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 3240766 3242314 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup353"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 3242315 3242729 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup169"; family_id "Gypsy"; class_id "LTR"; chr2RHet dm3_rmsk exon 3277824 3279072 . - . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup223"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 354910 357822 . + . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup220"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 483329 484050 . - . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1079"; family_id "CR1"; class_id "LINE"; chr3LHet dm3_rmsk exon 509933 513445 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup302"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 549647 552049 . + . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup223"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 792236 794266 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1098"; family_id "CR1"; class_id "LINE"; chr3LHet dm3_rmsk exon 823538 825639 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1102"; family_id "CR1"; class_id "LINE"; chr3LHet dm3_rmsk exon 956253 956909 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup163"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 957266 962595 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup240"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 983668 986473 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup315"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 1030809 1031465 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup167"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 1151071 1155572 . + . gene_id "Gypsy_I"; transcript_id "Gypsy_I_dup153"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 1160221 1165073 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup319"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 1373023 1377857 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup320"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 1538514 1544203 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup323"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 1683469 1684123 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup173"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 1690175 1690811 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup174"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 1737851 1738507 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup175"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 1744573 1744770 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup67"; family_id "Copia"; class_id "LTR"; chr3LHet dm3_rmsk exon 1774179 1777159 . - . gene_id "Stalker2_I"; transcript_id "Stalker2_I_dup106"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 1923212 1923837 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup177"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 2034838 2037212 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup329"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 2119474 2126010 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup330"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 2197643 2198319 . - . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1188"; family_id "CR1"; class_id "LINE"; chr3LHet dm3_rmsk exon 2228211 2230060 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup332"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 2388150 2391546 . - . gene_id "IVK_DM"; transcript_id "IVK_DM_dup87"; family_id "I"; class_id "LINE"; chr3LHet dm3_rmsk exon 2493951 2500000 . - . gene_id "Gypsy6_I"; transcript_id "Gypsy6_I_dup178"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 2501208 2501456 . - . gene_id "ACCORD2_I"; transcript_id "ACCORD2_I_dup230"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 2523539 2528337 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup334"; family_id "Gypsy"; class_id "LTR"; chr3LHet dm3_rmsk exon 2529719 2534595 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup336"; family_id "Gypsy"; class_id "LTR"; chr3RHet dm3_rmsk exon 103505 104162 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup181"; family_id "Gypsy"; class_id "LTR"; chr3RHet dm3_rmsk exon 115978 118430 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1232"; family_id "CR1"; class_id "LINE"; chr3RHet dm3_rmsk exon 168333 168746 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup185"; family_id "Gypsy"; class_id "LTR"; chr3RHet dm3_rmsk exon 168747 173788 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup414"; family_id "Gypsy"; class_id "LTR"; chr3RHet dm3_rmsk exon 174269 174682 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup186"; family_id "Gypsy"; class_id "LTR"; chr3RHet dm3_rmsk exon 174683 177140 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup416"; family_id "Gypsy"; class_id "LTR"; chr3RHet dm3_rmsk exon 235339 236750 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1237"; family_id "CR1"; class_id "LINE"; chr3RHet dm3_rmsk exon 391520 393355 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup345"; family_id "Gypsy"; class_id "LTR"; chr3RHet dm3_rmsk exon 621179 625027 . - . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1258"; family_id "CR1"; class_id "LINE"; chr3RHet dm3_rmsk exon 708787 710560 . + . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup266"; family_id "Gypsy"; class_id "LTR"; chr3RHet dm3_rmsk exon 714932 715949 . + . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup269"; family_id "Gypsy"; class_id "LTR"; chr3RHet dm3_rmsk exon 735903 736888 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1270"; family_id "CR1"; class_id "LINE"; chr3RHet dm3_rmsk exon 1048132 1048714 . + . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup201"; family_id "Gypsy"; class_id "LTR"; chr3RHet dm3_rmsk exon 1274333 1279708 . + . gene_id "IVK_DM"; transcript_id "IVK_DM_dup92"; family_id "I"; class_id "LINE"; chr3RHet dm3_rmsk exon 1391501 1397669 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup430"; family_id "Gypsy"; class_id "LTR"; chr3RHet dm3_rmsk exon 1397670 1398083 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup194"; family_id "Gypsy"; class_id "LTR"; chr3RHet dm3_rmsk exon 1725207 1725866 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup189"; family_id "Gypsy"; class_id "LTR"; chr3RHet dm3_rmsk exon 1969336 1971537 . - . gene_id "Gypsy_I"; transcript_id "Gypsy_I_dup201"; family_id "Gypsy"; class_id "LTR"; chr3RHet dm3_rmsk exon 1976195 1976261 . - . gene_id "DM176_I"; transcript_id "DM176_I_dup171"; family_id "Gypsy"; class_id "LTR"; chr3RHet dm3_rmsk exon 1976257 1976371 . - . gene_id "DM176_I"; transcript_id "DM176_I_dup172"; family_id "Gypsy"; class_id "LTR"; chr3RHet dm3_rmsk exon 2012595 2015484 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup357"; family_id "Gypsy"; class_id "LTR"; chr3RHet dm3_rmsk exon 2132247 2132697 . - . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup294"; family_id "Gypsy"; class_id "LTR"; chr3RHet dm3_rmsk exon 2137589 2140535 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1362"; family_id "CR1"; class_id "LINE"; chr3RHet dm3_rmsk exon 2152093 2154363 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1364"; family_id "CR1"; class_id "LINE"; chr3RHet dm3_rmsk exon 2162807 2163464 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup191"; family_id "Gypsy"; class_id "LTR"; chr3RHet dm3_rmsk exon 2166224 2169074 . - . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup287"; family_id "Gypsy"; class_id "LTR"; chr3RHet dm3_rmsk exon 2174172 2174747 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup193"; family_id "Gypsy"; class_id "LTR"; chr3RHet dm3_rmsk exon 2502594 2502988 . - . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup217"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 263872 264250 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup197"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 417914 418576 . - . gene_id "Baggins1"; transcript_id "Baggins1_dup329"; family_id "LOA"; class_id "LINE"; chrUextra dm3_rmsk exon 490459 490644 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup69"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 534429 535172 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup455"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 558971 559475 . + . gene_id "Gypsy6_I"; transcript_id "Gypsy6_I_dup207"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 561513 561682 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup70"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 632088 632637 . + . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup219"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 666562 666767 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup456"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 748847 750174 . + . gene_id "Gypsy12_LTR"; transcript_id "Gypsy12_LTR_dup193"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 781576 782842 . + . gene_id "TART"; transcript_id "TART_dup264"; family_id "telomeric"; class_id "LINE"; chrUextra dm3_rmsk exon 1105430 1106023 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup207"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 1136603 1137798 . - . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup295"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 1206989 1207411 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup382"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 1207512 1207872 . - . gene_id "DM412"; transcript_id "DM412_dup150"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 1207558 1208072 . - . gene_id "T412LTR"; transcript_id "T412LTR_dup34"; family_id "LTR"; class_id "LTR"; chrUextra dm3_rmsk exon 1214193 1214388 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup71"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 1263999 1264196 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup72"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 1283624 1283793 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup74"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 1337297 1338164 . + . gene_id "Gypsy12_LTR"; transcript_id "Gypsy12_LTR_dup199"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 1479272 1479814 . + . gene_id "IVK_DM"; transcript_id "IVK_DM_dup115"; family_id "I"; class_id "LINE"; chrUextra dm3_rmsk exon 1491307 1491476 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup76"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 1553696 1553892 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1507"; family_id "CR1"; class_id "LINE"; chrUextra dm3_rmsk exon 1558560 1558972 . + . gene_id "Baggins1"; transcript_id "Baggins1_dup350"; family_id "LOA"; class_id "LINE"; chrUextra dm3_rmsk exon 1566550 1567649 . - . gene_id "TART"; transcript_id "TART_dup297"; family_id "telomeric"; class_id "LINE"; chrUextra dm3_rmsk exon 1634074 1634271 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup77"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 1674843 1675634 . + . gene_id "Gypsy12_LTR"; transcript_id "Gypsy12_LTR_dup206"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 1682961 1683896 . + . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup339"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 1802357 1803441 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup392"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 1874696 1875287 . - . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup224"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 1943630 1944699 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup398"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 2168853 2169605 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup404"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 2169603 2169894 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup405"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 2270032 2270229 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup80"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 2275702 2275899 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup81"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 2295331 2295528 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup82"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 2329835 2330219 . - . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup227"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 2548657 2549227 . + . gene_id "TART_B1"; transcript_id "TART_B1_dup92"; family_id "telomeric"; class_id "LINE"; chrUextra dm3_rmsk exon 2553740 2553861 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup218"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 2559253 2560254 . + . gene_id "Gypsy12_LTR"; transcript_id "Gypsy12_LTR_dup229"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 2623068 2624066 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup427"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 2821009 2821596 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup436"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 2822098 2822482 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup438"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 2826450 2827057 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup440"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 2892734 2893715 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup443"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 3035810 3036529 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1570"; family_id "CR1"; class_id "LINE"; chrUextra dm3_rmsk exon 3052810 3053324 . + . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup237"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 3058643 3059056 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup209"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 3059057 3059176 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup495"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 3129560 3129757 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup84"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 3203233 3203707 . + . gene_id "DM412B_LTR"; transcript_id "DM412B_LTR_dup26"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 3343187 3343846 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup226"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 3457873 3458356 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup227"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 3535293 3536032 . - . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1586"; family_id "CR1"; class_id "LINE"; chrUextra dm3_rmsk exon 3577563 3578217 . + . gene_id "IVK_DM"; transcript_id "IVK_DM_dup124"; family_id "I"; class_id "LINE"; chrUextra dm3_rmsk exon 3619388 3619704 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup228"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 3922644 3923216 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup350"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 4113357 4113963 . - . gene_id "POGO"; transcript_id "POGO_dup58"; family_id "Pogo"; class_id "DNA"; chrUextra dm3_rmsk exon 4221101 4221566 . + . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup379"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 4268697 4269186 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup497"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 4308781 4308977 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1604"; family_id "CR1"; class_id "LINE"; chrUextra dm3_rmsk exon 4331740 4332657 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup499"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 4344371 4344921 . - . gene_id "Gypsy12_LTR"; transcript_id "Gypsy12_LTR_dup265"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 4362616 4363106 . + . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup380"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 4372298 4372494 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1605"; family_id "CR1"; class_id "LINE"; chrUextra dm3_rmsk exon 4506984 4507430 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup237"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 4534961 4535282 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup509"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 4643605 4644074 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup239"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 4649981 4650177 . - . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1615"; family_id "CR1"; class_id "LINE"; chrUextra dm3_rmsk exon 4667366 4667714 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup513"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 4743405 4743601 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup86"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 4770443 4770927 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup240"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 4799955 4800151 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1616"; family_id "CR1"; class_id "LINE"; chrUextra dm3_rmsk exon 4806564 4807465 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup517"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 4834620 4835060 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup518"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 4903649 4904547 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup520"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 5002630 5003323 . + . gene_id "DM412"; transcript_id "DM412_dup163"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 5199146 5199460 . + . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup255"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 5410456 5410970 . + . gene_id "T412LTR"; transcript_id "T412LTR_dup35"; family_id "LTR"; class_id "LTR"; chrUextra dm3_rmsk exon 5419739 5420020 . - . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup258"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 5467623 5467819 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup87"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 5468267 5469145 . + . gene_id "Stalker2_I"; transcript_id "Stalker2_I_dup157"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 5525509 5525875 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup249"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 5566323 5566520 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup88"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 5639085 5639356 . + . gene_id "DM412B_LTR"; transcript_id "DM412B_LTR_dup27"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 5645896 5646768 . - . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1631"; family_id "CR1"; class_id "LINE"; chrUextra dm3_rmsk exon 5871695 5872156 . - . gene_id "ROVER-I_DM"; transcript_id "ROVER-I_DM_dup287"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 5894742 5895604 . - . gene_id "TART"; transcript_id "TART_dup471"; family_id "telomeric"; class_id "LINE"; chrUextra dm3_rmsk exon 5939997 5940317 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup256"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 5968183 5968380 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup90"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 5973645 5974503 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup551"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 5989011 5989803 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup552"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 6006291 6007150 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup553"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 6057681 6057850 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup91"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 6214785 6215147 . + . gene_id "DM412B_LTR"; transcript_id "DM412B_LTR_dup28"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 6275627 6276474 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup556"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 6356315 6356488 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup92"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 6415169 6415678 . + . gene_id "TIRANT_I"; transcript_id "TIRANT_I_dup109"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 6477616 6478058 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup259"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 6596063 6596902 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup566"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 6726414 6727249 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup574"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 6731093 6731592 . - . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1651"; family_id "CR1"; class_id "LINE"; chrUextra dm3_rmsk exon 6777120 6777571 . - . gene_id "Gypsy6_I"; transcript_id "Gypsy6_I_dup257"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 6817033 6817865 . - . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup411"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 6841514 6842113 . - . gene_id "Stalker2_I"; transcript_id "Stalker2_I_dup170"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 6903682 6904071 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup261"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 6907402 6907941 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup584"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 6920422 6921251 . + . gene_id "DM412"; transcript_id "DM412_dup170"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 6992859 6993661 . - . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup412"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 7102128 7102952 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup593"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 7150450 7150988 . + . gene_id "DM412B_LTR"; transcript_id "DM412B_LTR_dup30"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 7235015 7235497 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup263"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 7315986 7316645 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup600"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 7334043 7334240 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup95"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 7370695 7370891 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1665"; family_id "CR1"; class_id "LINE"; chrUextra dm3_rmsk exon 7446279 7446798 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup606"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 7507585 7508242 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup265"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 7588853 7588998 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup267"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 7616213 7617024 . + . gene_id "Gypsy12_LTR"; transcript_id "Gypsy12_LTR_dup342"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 7702096 7702404 . - . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup269"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 7734930 7735285 . - . gene_id "DM412B_LTR"; transcript_id "DM412B_LTR_dup31"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 7900550 7901354 . - . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup428"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 7922267 7922830 . - . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup272"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 8078372 8078451 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1684"; family_id "CR1"; class_id "LINE"; chrUextra dm3_rmsk exon 8250902 8251698 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup550"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 8271783 8272323 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup636"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 8290345 8291138 . - . gene_id "TART_B1"; transcript_id "TART_B1_dup139"; family_id "telomeric"; class_id "LINE"; chrUextra dm3_rmsk exon 8314031 8314435 . - . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup260"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 8459459 8459943 . + . gene_id "T412LTR"; transcript_id "T412LTR_dup39"; family_id "LTR"; class_id "LTR"; chrUextra dm3_rmsk exon 8459627 8460144 . + . gene_id "DM412"; transcript_id "DM412_dup172"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 8478977 8479082 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup553"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 8479083 8479496 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup219"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 8532787 8533222 . - . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup435"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 8560978 8561767 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup645"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 8590054 8590223 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup100"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 8734305 8735091 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup557"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 8806116 8806901 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup654"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 8833870 8834362 . + . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup276"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 8872012 8872417 . + . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup277"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 8926762 8926958 . - . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1699"; family_id "CR1"; class_id "LINE"; chrUextra dm3_rmsk exon 9061442 9062185 . - . gene_id "Gypsy12_LTR"; transcript_id "Gypsy12_LTR_dup356"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 9101936 9102517 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup659"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 9118656 9118814 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup559"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 9118815 9119228 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup222"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 9136851 9137035 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup101"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 9250524 9251301 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup662"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 9351400 9351889 . - . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1706"; family_id "CR1"; class_id "LINE"; chrUextra dm3_rmsk exon 9487421 9487729 . + . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup282"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 9580526 9581298 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup669"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 9771332 9772101 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup672"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 9849567 9849768 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup281"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 9856519 9856717 . - . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup286"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 9861728 9862489 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup673"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 9899335 9899815 . - . gene_id "DM412B_LTR"; transcript_id "DM412B_LTR_dup33"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 9935491 9935857 . + . gene_id "DM412B_LTR"; transcript_id "DM412B_LTR_dup34"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 9935858 9935990 . + . gene_id "DM412B_LTR"; transcript_id "DM412B_LTR_dup35"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 9994442 9995207 . - . gene_id "Gypsy6_I"; transcript_id "Gypsy6_I_dup282"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 10381383 10382143 . - . gene_id "Gypsy6_I"; transcript_id "Gypsy6_I_dup286"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 10486351 10487110 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup697"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 10539624 10540301 . + . gene_id "DM412"; transcript_id "DM412_dup184"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 10543476 10543672 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup107"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 10619983 10620180 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup108"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 11073586 11074338 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup714"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 11164747 11165497 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup574"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 11167300 11168050 . + . gene_id "IVK_DM"; transcript_id "IVK_DM_dup143"; family_id "I"; class_id "LINE"; chrUextra dm3_rmsk exon 11320396 11321145 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup721"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 11379012 11379760 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup725"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 11560510 11560996 . - . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup298"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 11582535 11583278 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup733"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 11648555 11649291 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup735"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 11729718 11730462 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup740"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 11747463 11748207 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup580"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 11766055 11766797 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup490"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 11916285 11917027 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup747"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 11919657 11920399 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup748"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 12017406 12018147 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup752"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 12023632 12023801 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup109"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 12084875 12085287 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup228"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 12085288 12085501 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup582"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 12111673 12112413 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup758"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 12170543 12170736 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup110"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 12210874 12211613 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup759"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 12320847 12321585 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup585"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 12392963 12393700 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup765"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 12445757 12446494 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup766"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 12468359 12469095 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup768"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 12502676 12503268 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup772"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 12574033 12574537 . + . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup494"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 12608080 12608347 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup229"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 12608348 12608815 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup586"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 12746217 12746386 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup111"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 12761216 12761385 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup112"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 12762629 12763363 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup781"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 12791845 12792001 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup588"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 12792002 12792415 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup230"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 12801853 12802586 . - . gene_id "DM412"; transcript_id "DM412_dup191"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 13003552 13003917 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup231"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 13003918 13004284 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup590"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 13012838 13013035 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup113"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 13031417 13031757 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup301"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 13090101 13090449 . - . gene_id "T412LTR"; transcript_id "T412LTR_dup41"; family_id "LTR"; class_id "LTR"; chrUextra dm3_rmsk exon 13095090 13095821 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup790"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 13145823 13146552 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup792"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 13195854 13196413 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup304"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 13203200 13203369 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup114"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 13359258 13359976 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup527"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 13368369 13369097 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup801"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 13513532 13514102 . - . gene_id "DM412B_LTR"; transcript_id "DM412B_LTR_dup38"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 13568026 13568291 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup232"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 13568292 13568753 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup593"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 13689617 13690340 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup811"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 13699538 13700264 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup596"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 13863890 13864605 . + . gene_id "DM412"; transcript_id "DM412_dup198"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 13898531 13898702 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup309"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 13912672 13913280 . + . gene_id "Gypsy6_I"; transcript_id "Gypsy6_I_dup312"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 14161352 14162074 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup545"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 14234569 14235290 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup835"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 14420512 14420954 . - . gene_id "DM412B_LTR"; transcript_id "DM412B_LTR_dup39"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 14429265 14429985 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup839"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 14480972 14481691 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup841"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 14585098 14585815 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup555"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 14641608 14642326 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup844"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 14643246 14643964 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup845"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 14801198 14801911 . - . gene_id "DM412B_LTR"; transcript_id "DM412B_LTR_dup40"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 14918063 14918779 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup853"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 15010326 15011041 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup564"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 15128635 15129292 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup317"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 15145715 15146429 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup860"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 15182390 15182946 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup319"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 15320001 15320714 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup867"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 15336281 15336994 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup869"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 15411173 15411820 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup322"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 15612583 15612802 . + . gene_id "POGO"; transcript_id "POGO_dup66"; family_id "Pogo"; class_id "DNA"; chrUextra dm3_rmsk exon 15640191 15640901 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup883"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 15724535 15725245 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup884"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 15812893 15813373 . + . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup278"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 16121328 16121525 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup120"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 16144641 16144838 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup121"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 16219727 16220433 . - . gene_id "NOMAD_I"; transcript_id "NOMAD_I_dup280"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 16354882 16355051 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup122"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 16419763 16420468 . + . gene_id "DM412B_LTR"; transcript_id "DM412B_LTR_dup41"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 16443943 16444408 . - . gene_id "T412LTR"; transcript_id "T412LTR_dup42"; family_id "LTR"; class_id "LTR"; chrUextra dm3_rmsk exon 16450018 16450214 . - . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1790"; family_id "CR1"; class_id "LINE"; chrUextra dm3_rmsk exon 16453089 16453509 . + . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup544"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 16529332 16529408 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup237"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 16529409 16530033 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup622"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 16837298 16837913 . - . gene_id "DM412B_LTR"; transcript_id "DM412B_LTR_dup42"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 16862996 16863696 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup915"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 16992168 16992869 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup920"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 17001792 17002493 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup922"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 17027456 17028157 . - . gene_id "DM412B_LTR"; transcript_id "DM412B_LTR_dup43"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 17221404 17221817 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup238"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 17221818 17221904 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup626"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 17530604 17530896 . + . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup316"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 17768434 17768846 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup240"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 17768847 17768942 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup630"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 17786236 17786432 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1803"; family_id "CR1"; class_id "LINE"; chrUextra dm3_rmsk exon 17913642 17913836 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup334"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 18148886 18149054 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup123"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 18492386 18493072 . + . gene_id "Copia2_I"; transcript_id "Copia2_I_dup423"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 18536680 18537370 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup636"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 18578603 18579293 . - . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup637"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 18870829 18871517 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup974"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 18899228 18899915 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup977"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 18907108 18907779 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup642"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 19142583 19143269 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup989"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 19144944 19145630 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup990"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 19208740 19209153 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup242"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 19209154 19209331 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup644"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 19226168 19226623 . + . gene_id "T412LTR"; transcript_id "T412LTR_dup43"; family_id "LTR"; class_id "LTR"; chrUextra dm3_rmsk exon 19328097 19328776 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup997"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 19335638 19335834 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1810"; family_id "CR1"; class_id "LINE"; chrUextra dm3_rmsk exon 19460722 19460965 . - . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup322"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 19573658 19574297 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup344"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 19604935 19605408 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup345"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 19610833 19611098 . + . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup323"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 19663660 19664337 . - . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1813"; family_id "CR1"; class_id "LINE"; chrUextra dm3_rmsk exon 19695763 19696445 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1009"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 19749726 19750030 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup347"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 19824016 19824697 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1015"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 19851352 19852032 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1017"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 19870877 19871557 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup656"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 20052745 20053274 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1021"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 20105098 20105612 . - . gene_id "T412LTR"; transcript_id "T412LTR_dup44"; family_id "LTR"; class_id "LTR"; chrUextra dm3_rmsk exon 20323731 20324408 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1032"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 20430184 20430860 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1042"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 20446501 20447177 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1043"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 20459710 20460257 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup354"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 20463595 20464152 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup355"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 20573012 20573133 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup652"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 20573134 20573546 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup244"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 20694709 20694754 . + . gene_id "POGO"; transcript_id "POGO_dup68"; family_id "Pogo"; class_id "DNA"; chrUextra dm3_rmsk exon 20737713 20737995 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup357"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 20784536 20785205 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1053"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 20898322 20898891 . - . gene_id "DM412B_LTR"; transcript_id "DM412B_LTR_dup45"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 20977865 20978433 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup363"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 20980680 20980850 . + . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup328"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 20984041 20984712 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup676"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 21106789 21107460 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1063"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 21131266 21131362 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup364"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 21377241 21377401 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1839"; family_id "CR1"; class_id "LINE"; chrUextra dm3_rmsk exon 21461959 21462128 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup126"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 21528691 21529097 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1078"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 21631573 21631769 . - . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup332"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 21636942 21637608 . + . gene_id "IVK_DM"; transcript_id "IVK_DM_dup163"; family_id "I"; class_id "LINE"; chrUextra dm3_rmsk exon 21640777 21641443 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1082"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 21664856 21665217 . + . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup333"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 21711341 21711989 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1086"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 21758994 21759541 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup369"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 21826284 21826949 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1088"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 21882187 21882851 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1090"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 21885247 21885911 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1091"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 21912022 21912686 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup689"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 22126822 22127485 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1101"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 22131406 22131601 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup375"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 22207714 22208376 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1105"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 22239760 22240422 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1106"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 22596021 22596680 . - . gene_id "DM412B_LTR"; transcript_id "DM412B_LTR_dup46"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 22630198 22630856 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1112"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 22784344 22784756 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup251"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 22784757 22784859 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup668"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 22831953 22832331 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup380"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 22994621 22995276 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1122"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 23057337 23057991 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1124"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 23066397 23066815 . - . gene_id "DM412B_LTR"; transcript_id "DM412B_LTR_dup47"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 23173643 23174205 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1132"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 23303172 23303787 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup383"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 23336267 23336919 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1135"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 23443874 23444070 . + . gene_id "DMCR1A"; transcript_id "DMCR1A_dup1862"; family_id "CR1"; class_id "LINE"; chrUextra dm3_rmsk exon 23444078 23444448 . - . gene_id "Gypsy12_LTR"; transcript_id "Gypsy12_LTR_dup536"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 23847780 23847903 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup385"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 23991993 23992531 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup386"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 24009236 24009433 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup128"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 24345996 24346636 . + . gene_id "Gypsy12_LTR"; transcript_id "Gypsy12_LTR_dup545"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 24360836 24361477 . + . gene_id "QUASIMODO_I"; transcript_id "QUASIMODO_I_dup723"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 24576989 24577527 . + . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup341"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 24811648 24812150 . + . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup391"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 25197241 25197870 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1185"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 25294542 25294915 . + . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup342"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 25304648 25305061 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup253"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 25305062 25305121 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup679"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 25319135 25319332 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup129"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 25431843 25432469 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1194"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 25722607 25722945 . + . gene_id "TIRANT_I"; transcript_id "TIRANT_I_dup139"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 25919521 25919667 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup130"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 26246267 26246681 . + . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup255"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 26246682 26246789 . + . gene_id "DM297_I"; transcript_id "DM297_I_dup682"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 26305984 26306164 . - . gene_id "QUASIMODO_LTR"; transcript_id "QUASIMODO_LTR_dup396"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 26399753 26400360 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1224"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 26779758 26780354 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1237"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 26821013 26821485 . - . gene_id "Gypsy4_I"; transcript_id "Gypsy4_I_dup648"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 27117304 27117501 . - . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup132"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 27229943 27230524 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1247"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 27234053 27234637 . + . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1248"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 27886616 27886879 . - . gene_id "IDEFIX_LTR"; transcript_id "IDEFIX_LTR_dup350"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 27905485 27905571 . - . gene_id "DM297_I"; transcript_id "DM297_I_dup690"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 27905572 27905891 . - . gene_id "DM297_LTR"; transcript_id "DM297_LTR_dup262"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 28209068 28209265 . + . gene_id "Copia2_LTR_DM"; transcript_id "Copia2_LTR_DM_dup133"; family_id "Copia"; class_id "LTR"; chrUextra dm3_rmsk exon 28715167 28715519 . + . gene_id "TABOR_I"; transcript_id "TABOR_I_dup112"; family_id "Gypsy"; class_id "LTR"; chrUextra dm3_rmsk exon 28866030 28866253 . + . gene_id "SAR_DM"; transcript_id "SAR_DM_dup7047"; family_id "Satellite"; class_id "Satellite"; chrUextra dm3_rmsk exon 28961580 28961826 . - . gene_id "STALKER4_I"; transcript_id "STALKER4_I_dup1265"; family_id "Gypsy"; class_id "LTR";