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comparison tn93.xml @ 2:b38f620a3628 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tn93/ commit 98c0d716cbd1237ae735ce83e0153ee246abd5d8"
author iuc
date Wed, 20 Apr 2022 16:59:49 +0000
parents ccebde0e2d61
children 2fd21f5b16bc
comparison
equal deleted inserted replaced
1:9d793e88e15f 2:b38f620a3628
1 <tool id="tn93" name="TN93" version="@VERSION@"> 1 <tool id="tn93" name="TN93" version="@TOOL_VERSION@+galaxy1">
2 <description>compute distances between aligned sequences</description> 2 <description>compute distances between aligned sequences</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <requirements> 6 <expand macro="requirements" />
7 <requirement type="package" version="@VERSION@">tn93</requirement>
8 </requirements>
9 <version_command><![CDATA[tn93 --version]]></version_command> 7 <version_command><![CDATA[tn93 --version]]></version_command>
10 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
11 tn93 9 tn93
12 -o '$tn93_distances' 10 -o '$tn93_distances'
13 #if str($options.advanced) == 'advanced': 11 #if str($options.advanced) == 'advanced':
34 <option value="defaults">Use defaults</option> 32 <option value="defaults">Use defaults</option>
35 <option value="advanced">Specify additional parameters</option> 33 <option value="advanced">Specify additional parameters</option>
36 </param> 34 </param>
37 <when value="defaults" /> 35 <when value="defaults" />
38 <when value="advanced"> 36 <when value="advanced">
39 <param name="threshold" type="float" value="0.015" label="Only report distances below this threshold" /> 37 <param name="threshold" type="float" value="0.015" min="0" max="1" label="Only report distances below this threshold" />
40 <param name="ambigs" argument="-a" type="select" label="Strategy for ambiguous nucleotides"> 38 <param name="ambigs" argument="-a" type="select" label="Strategy for ambiguous nucleotides">
41 <option value="handle">handle</option> 39 <option value="handle">handle</option>
42 <option value="resolve">resolve</option> 40 <option value="resolve">resolve</option>
43 <option value="average">average</option> 41 <option value="average">average</option>
44 <option value="skip">skip</option> 42 <option value="skip">skip</option>