Mercurial > repos > iuc > tn93_filter
comparison tn93_filter.xml @ 2:1aa73004ba9b draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tn93/ commit e9f254ea1c6712a96512cae4df91bfec8207a492
author | iuc |
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date | Sat, 28 Sep 2024 16:34:09 +0000 |
parents | cf50aeb956f2 |
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1:cf50aeb956f2 | 2:1aa73004ba9b |
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1 <tool id="tn93_filter" name="TN93 Filter" version="@TOOL_VERSION@+galaxy1"> | 1 <tool id="tn93_filter" name="TN93 Filter" version="@TOOL_VERSION@+galaxy0"> |
2 <description>- remove sequences from a reference that are within a given distance of of a cluster</description> | 2 <description>- remove sequences from a reference that are within a given distance of of a cluster</description> |
3 <macros> | 3 <macros> |
4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="requirements"> | 6 <expand macro="requirements"> |
7 <requirement type="package" version="1.70">biopython</requirement> | 7 <requirement type="package" version="1.84">biopython</requirement> |
8 </expand> | 8 </expand> |
9 <version_command><![CDATA[tn93 --version]]></version_command> | 9 <version_command><![CDATA[tn93 --version]]></version_command> |
10 <command detect_errors="exit_code"><![CDATA[ | 10 <command detect_errors="exit_code"><![CDATA[ |
11 cat '$reads' > filtered_msa.fa && | 11 cat '$reads' > filtered_msa.fa && |
12 tn93 -o pairwise.csv -s filtered_msa.fa -t $threshold '$clusters' && | 12 tn93 -o pairwise.csv -s filtered_msa.fa -t $threshold '$clusters' && |