Mercurial > repos > iuc > tn93_filter

diff test-data/tn93-in1.fa @ 0:ba95715078c9 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tn93/ commit eec640a7c26b728f8175885926fe368b0756d9e5"
author iuc
date Fri, 23 Apr 2021 03:05:08 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/tn93-in1.fa	Fri Apr 23 03:05:08 2021 +0000
@@ -0,0 +1,224 @@
+>B_FR_83_HXB2_ACC_K03455_5
+CCCATTAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGA
+TGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCAT
+TAGTAGAAATTTGTACAGAGATGGAAAAGGAAGGGAAAATTTCAAAAATT
+GGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGA
+CAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAA
+CTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTA
+AAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTC
+AGTTCCCTTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTA
+GTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCA
+CAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAAT
+CTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACA
+TGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACA
+AAAATAGAGGAGCTGAGACAACATCTGTTGAGGTGGGGACTTACCACACC
+AGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAAC
+TCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGAC
+AGCTGGACTGTCAATGACATACAGAAGTTAGTGGGGAAATTGAATTGGGC
+AAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTA
+GAGGAACCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAG
+CTAGAACTGGCAGAAAACAGAGAGATTCTAAAAGAACCAGTACATGGAGT
+GTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGC
+AAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAA
+ACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACA
+ATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGG
+GAAAGACTCCTAAATTTAAACTGCCCATACAAAAGGAAACATGGGAAACA
+TGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGT
+TAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCA
+TAGTAGGAGCAGAAACCTTC
+>B_US_83_RF_ACC_M17451
+CCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGA
+TGGCCCAAAAGTTAAACAATGGCCATTGACAGAGGAAAAAATAAAAGCAT
+TGGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCCAAAATT
+GGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGA
+CAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAA
+CTCAAGACTTCTGGGAAGTTCAGTTAGGAATACCACATCCTGCAGGGTTA
+AAAAAGAAGAAATCAGTAACAGTATTGGATGTGGGTGATGCATATTTTTC
+AGTTCCCTTAGATAAAGAGTTCAGGAAGTATACTGCATTTACCATACCTA
+GTATAAACAATGAAACACCACGGATTAGATATCAGTACAATGTGCTTCCA
+CAAGGGTGGAAAGGATCACCAGCAATATTCCAAAGTAGTATGACAAAAAT
+CTTAGAGCCTTTTAAAAAACAAAATCCAGAAATAGTTATCTATCAATACA
+TGGATGATTTGTATGTAGGATCTGATTTAGAAATAGGGCAGCATAGAATA
+AAAATAGAGGAACTGAGAGAACATCTGTTAAAGTGGGGGTTTACCACACC
+GGACAAGAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAAC
+TCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGAC
+AGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGC
+AAGTCAGATTTATGCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTA
+GGGGAACCAAAGCACTAACAGAAGTAGTACAACTAACAAAAGAAGCAGAG
+CTAGAACTGGCAGAAAATAGGGAGATTCTAAAAGAACCAGTACATGGAGT
+GTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGC
+AAGGCCAATGGACATACCAAATTTATCAAGAGCCATTTAAAAACCTGAAA
+ACAGGAAAGTATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACA
+ATTAACAGAGGCAGTACAAAAAGTAGCCACAGAAAGCATAGTAATATGGG
+GAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAGGCA
+TGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGT
+CAATACCCCTCCCTTAGTAAAATTGTGGTACCAGTTAGAAAAAGAACCCA
+TAATAGGAGCAGAAACTTTC
+>B_US_86_JRFL_ACC_U63632
+CCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGA
+TGGCCCAAAAGTCAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCAT
+TAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATT
+GGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAGGA
+CAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAAAA
+CTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTA
+AAAAAGAGAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTC
+AGTTCCCTTAGATAAAGACTTCAGGAAATATACTGCATTTACCATACCTA
+GTATAAACAATGAGACACCAGGGATTAGGTATCAGTACAATGTGCTTCCG
+CAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAAT
+CTTAGAGCCTTTTAGAAAACAAAATCCAGACATAATTATCTATCAATACA
+TGGATGATTTGTATGTAGGATCTGACTTAGAGATAGGGCAGCATAGAGCA
+AAAATAGAGGAATTGAGACAACATCTGTTGAGGTGGGGGTTTACCACACC
+AGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAAC
+TCCATCCTGACAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGAC
+AGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGC
+AAGTCAGATTTACGCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTA
+GGGGAACCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAG
+CTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAGCCAGTACATGGAGT
+GTATTATGACCCATCAAAAGACTTAATAGCAGAACTACAGAAGCAGGGGC
+AAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAATTCTGAAA
+ACAGGAAAATATGCAAGAACGAGGGGTGCCCACACTAATGATGTAAAACA
+ATTAACAGAGGCAGTGCAAAAAATAGCCAATGAAAGCATAGTAATATGGG
+GAAAGATTCCTAAATTTAAATTACCCATACAAAAAGAAACATGGGAAACA
+TGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGT
+CAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCA
+TAGTAGGAGCAGAAACTTTC
+>B_US_90_WEAU160_ACC_U21135
+CCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGA
+TGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAGAAAATAAAAGCAT
+TAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATT
+GGGCCTGAAAATCCATATAATACTCCAGTATTTGCCATAAAGAAAAAAGA
+CAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAA
+CTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCTTCAGGGTTA
+AAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTC
+AGTACCCTTAGATGAAGACTTCAGGAAGTACACTGCATTTACCATACCTA
+GTATAAACAATGAAACACCAGGGATTAGATATCAGTACAATGTGCTTCCA
+CAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAAT
+ATTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACA
+TGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACA
+AAAATAGAGGAGCTGAGACAACATCTGTTGAGGTGGGGATTTACCACACC
+AGACAAAAAACATCAAAAAGACCCTCCATTCCTTTGGATGGGTTATGAAC
+TCCATCCTGATAAATGGACAGTACAGCCTATAAAGCTGCCAGAAAAAGAA
+AGTTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGC
+AAGTCAGATTTACGCAGGGATTAAAGTAAAGCAACTATGTAAACTCCTTA
+GGGGGACCAAAGCACTAACAGAAATAATACCAATAACAGAAGAAGCAGAG
+CTAGAGCTGGCAGAAAACAGGGAAATTCTAAAAGAACCGGTACATGGAGT
+GTATTATGACCCATCAAAAGACTTAATAGCAGAGCTACAGAAGCAGGGGC
+AAGGCCAATGGACATATCAGATTTATCAAGAGCCATTTAAAAATCTGAAA
+ACAGGAAAGTATGCAAGAGTGAGGGGTGCCCACACTAATGATGTAAAACA
+ATTAACAGAGGCAGTGCAGAAAATAACCACAGAAAGCATAGTAATATGGG
+GAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAACA
+TGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGT
+CAATACCCCTCCCTTAGTGAAATTATGGTATCAGTTAGAGAAAGAACCCA
+TAGTAGGAGCAGAAACTTTC
+>D_CD_83_ELI_ACC_K03454_7
+CCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGA
+TGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCAT
+TAACAGAAATTTGTACAGATATGGAAAAGGAAGGAAAAATTTCAAGAATT
+GGGCCTGAAAATCCATACAATACTCCAATATTTGCCATAAAGAAAAAAGA
+CAGTACCAAGTGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAA
+CTCAAGATTTCTGGGAAGTTCAATTAGGAATACCGCATCCTGCAGGGCTG
+AAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTC
+AGTTCCCTTAGATGAAGATTTTAGGAAATATACCGCCTTTACCATATCTA
+GTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCA
+CAGGGATGGAAAGGATCACCGGCAATATTCCAAAGTAGCATGACAAAAAT
+CTTAGAGCCCTTTAGAAAACAAAATCCAGAAATGGTTATCTATCAATACA
+TGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGGACA
+AAAATAGAGAAATTAAGAGAACATCTATTGAGGTGGGGATTTACCAGACC
+AGATAAAAAACATCAGAAAGAACCCCCATTTCTTTGGATGGGTTATGAAC
+TCCATCCTGATAAATGGACAGTACAGTCTATAAAACTGCCAGAAAAGGAG
+AGCTGGACTGTCAATGATATACAGAACTTAGTGGAGAGATTAAACTGGGC
+AAGCCAGATTTATCCAGGAATTAAAGTAAGACAATTATGTAAACTCCTTA
+GGGGAACCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAA
+TTAGAACTGGCAGAAAACAGGGAAATTTTAAAAGAACCAGTACATGGAGT
+GTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAACAAGGGC
+ACGGCCAATGGACATACCAAATTTATCAAGAACCATTTAAAAATCTGAAA
+ACAGGAAAGTATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAGCA
+ATTAGCAGAGGCAGTGCAAAGAATATCCACAGAAAGCATAGTGATATGGG
+GAAGGACTCCTAAATTTAGACTACCCATACAAAAGGAAACATGGGAAACA
+TGGTGGGCAGAGTATTGGCAAGCCACTTGGATTCCTGAGTGGGAATTTGT
+CAATACCCCTCCTTTAGTAAAATTATGGTACCAGTTAGAGAAGGAACCCA
+TAATAGGAGCAGAAACTTTC
+>D_CD_83_NDK_ACC_M27323
+CCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGA
+TGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCAT
+TAACAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAGAATT
+GGGCCTGAAAATCCATATAATACTCCAATATTTGCCATAAAGAAAAAAGA
+CAGTACCAAGTGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAA
+CTCAAGATTTCTGGGAGGTTCAATTAGGAATACCGCATCCTGCAGGGCTG
+AAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTCTC
+AGTTCCCTTAGATGAAGATTTTAGGAAATATACCGCATTTACCATACCTA
+GTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTCCCA
+CAGGGATGGAAAGGATCACCGGCAATATTCCAAAGTAGCATGACAAAAAT
+CTTAGAGCCCTTTAGAAAACAAAATCCAGAAATAGTTATCTATCAATACA
+TGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACA
+AAAATAGAGGAATTAAGAGAACATCTATTGAGGTGGGGATTTACCACACC
+AGATAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAAC
+TCCATCCTGATAAATGGACAGTACAGCCTATAAACCTGCCAGAAAAAGAA
+AGCTGGACTGTCAATGATATACAGAAGTTAGTGGGGAAATTAAACTGGGC
+AAGCCAGATTTATGCAGGAATTAAAGTAAAGCAATTATGTAAACTCCTTA
+GGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAA
+TTAGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGT
+GTATTATGACCCATCAAAAGACTTAATAGCAGAACTACAGAAACAAGGGG
+ACGGCCAATGGACATACCAAATTTATCAAGAACCATTTAAAAATCTAAAA
+ACAGGAAAGTATGCAAGAACGAGGGGTGCCCACACTAATGATGTAAAACA
+ATTAACAGAGGCAGTGCAAAAAATAGCCACAGAAAGCATAGTGATATGGG
+GAAAGACTCCTAAATTTAAACTACCCATACAAAAGGAAACATGGGAAACA
+TGGTGGATAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAATTTGT
+CAATACCCCTCCTTTAGTAAAATTATGGTACCAGTTAGAGAAGGAACCCA
+TAATAGGAGCAGAAACTTTC
+>D_CD_84_84ZR085_ACC_U88822
+CCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGA
+TGGCCCAAAAGTTAAACAATGGCCGTTGACAGAAGAAAAAATAAAAGCAT
+TAACAGAAATTTGTACAGATATGGAAAAGGAAGGAAAAATTTCAAGAATT
+GGGCCTGAAAATCCATACAATACTCCAATATTTGCCATAAAGAAAAAAGA
+CAGTACTAAGTGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAA
+CTCAAGACTTCTGGGAAGTTCAATTAGGGATACCACATCCTGCAGGATTA
+AAGAAGAAAAAGTCAATAACAGTACTGGATGTGGGCGATGCATATTTTTC
+AATTCCCTTATGTGAAGACTTTAGGAAGTACACTGCATTTACCATACCTA
+GTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTACTTCCA
+CAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGATAAAAAT
+CTTAGAGCCCTTTAGAAAACAAAATCCAGAAGTAGTTATCTATCAATACA
+TGGATGATTTGTATGTAGGATCTGATTTAGAAATAGGACAGCATAGAGCA
+AAAATAGAGAAATTAAGAGAACATCTGTTGAGGTGGGGGCTTACCACACC
+AGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAAC
+TCCATCCTGATAAGTGGACAGTACAGTCTATAACACTGCCAGAGAAAGAA
+AGCTGGACTGTCAATGATATACAGAAGTTAGTGGGAAAATTAAATTGGGC
+AAGCCAGATTTATCCAGGAATTAAAGTAAAGCAATTATGTAAACTCCTTA
+GGGGAACCAAGGCACTAACAGAGGTAATACCACTAACAGAAGAAGCAGAA
+TTAGAACTGGCAGAAAACAGGGAGATTCTAAAGGAACCAATGCATGGAGT
+GTATTATGACCCATCAAAAGACTTAATAGCAGAATTACAGAAACAAGGGC
+AAGGTCAATGGACATATCAAATTTATCAAGAACCATTTAAAAATCTGAAA
+ACAGGAAAGTATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACA
+GTTAACAGAGGCAGTGCAAAAAATAGCCATAGAAAGCATAGTGATATGGG
+GAAAGACTCCTAAATTTAGACTACCCATACAAAAGGAAACATGGGAAACA
+TGGTGGATAGACTATTGGCAAGCCACCTGGATTCCTGAGTGGGAATTTGT
+CAATACCCCTCCTTTAGTAAAATTATGGTACCAGTTAGAGAAGGAACCCA
+TAATAGGAGCAGAAACTTTC
+>D_UG_94_94UG114_ACC_U88824
+CCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGGATGGA
+TGGCCCAAAAGTTAAACAATGGCCGTTGACAGAAGAAAAAATAAAAGCAC
+TAATAGAAATTTGTTCAGAACTAGAAAAGGAAGGAAAAATTTCAAAAATT
+GGGCCTGAAAACCCATACAATACTCCAATATTTGCCATAAAGAAAAAAGA
+CAGTACTAAGTGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAA
+CTCAAGACTTTTGGGAAGTTCAACTAGGAATACCACATCCTGCAGGGCTA
+AAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGACGCATATTTTTC
+AGTTCCCTTACATGAAGACTTTAGAAAATATACCGCATTCACCATACCTA
+GTACAAACAATGAGACACCAGGAATTAGATATCAGTACAATGTGCTTCCA
+CAAGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAAT
+CTTAGAACCTTTTAGAAAACAAAATCCAGAAATGATTATCTATCAATACA
+TGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAATA
+AAAATAGAGGAATTAAGGGGACACCTCTTGAAGTGGGGATTTACCACACC
+AGACAAAAAGTATCAGAAAGAACCCCCATTTCTTTGGATGGGTTATGAAC
+TCCATCCTGATAAGTGGACAGTACAGCCTATACATCTGCCAGAAAAGGAA
+AGCTGGACTGTCAATGATATACAGAAGTTAGTGGGAAAATTAAATTGGGC
+AAGCCAGATTTATCCAGGAATTAAAGTAAGACAATTATGCAAATGCCTTA
+GGGGAGCCAAAGCACTGACAGAAGTAATACCACTGACAGCAGAAGCAGAA
+TTAGAACTGGCAGAAAACAGGGAAATACTAAAAGAACCAGTACATGGAGC
+GTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAACAAGGGC
+AAGATCAATGGACATATCAAATATATCAAGAACAATATAAAAATCTGAAA
+ACAGGAAAGTATGCGAAAATGAGGGGTACCCACACTAATGATGTAAAACA
+ATTAACAGAGGCAGTGCAGAAAATAGCCCAAGAATGTATAGTAATATGGG
+GAAAGACTCCTAAATTTAGACTACCCATACAAAAGGAAACATGGGAAACA
+TGGTGGACAGAGTATTGGCAGGCCACCTGGATTCCTGAGTGGGAGTATGT
+CAACACCCCTCCTTTAGTTAAATTATGGTATCAGTTAGAGAAGGAACCCA
+TAGTAGGAGCAGAAACTTTC