Mercurial > repos > iuc > tooldistillator_summarize

annotate test-data/summarize/refseqmasher_output.json @ 0:05c1bcba20c9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
author iuc
date Tue, 30 Apr 2024 08:41:54 +0000
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05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
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1 [{"reference_database_version": "", "analysis_software_version": "1.0", "analysis_software_name": "refseqmasher", "results": [{"name": "refseqmasher_report", "file_path": "tests/data/dummy/refseqmasher/refsesqmasher.tsv", "hid": "12345", "galaxy_hid": "", "content": [{"sample": "10_Enterococcus_faecalis_S17_L001", "top_taxonomy_name": "Enterococcus faecalis EnGen0295", "distance": 0.00802142, "pvalue": 0.0, "matching": "314/400", "full_taxonomy": "Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; faecalis; EnGen0295", "taxonomic_species": "Enterococcus faecalis", "taxonomic_genus": "Enterococcus", "taxonomic_family": "Enterococcaceae", "taxonomic_order": "Lactobacillales", "taxonomic_class": "Bacilli", "taxonomic_phylum": "Firmicutes", "taxonomic_superkingdom": "Bacteria", "subspecies": null, "serovar": null, "plasmid": null, "bioproject": "PRJNA224116", "biosample": "SAMN00809230", "taxid": 1158669, "assembly_accession": "GCF_000395135.1", "match_id": "./rcn/refseq-NZ-1158669-PRJNA224116-SAMN00809230-GCF_000395135.1-.-Enterococcus_faecalis_EnGen0295.fna"}, {"sample": "10_Enterococcus_faecalis_S17_L001", "top_taxonomy_name": "Enterococcus faecalis EnGen0425", "distance": 0.00869982, "pvalue": 0.0, "matching": "308/400", "full_taxonomy": "Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; faecalis; EnGen0425", "taxonomic_species": "Enterococcus faecalis", "taxonomic_genus": "Enterococcus", "taxonomic_family": "Enterococcaceae", "taxonomic_order": "Lactobacillales", "taxonomic_class": "Bacilli", "taxonomic_phylum": "Firmicutes", "taxonomic_superkingdom": "Bacteria", "subspecies": null, "serovar": null, "plasmid": null, "bioproject": "PRJNA224116", "biosample": "SAMN02333901", "taxid": 1391495, "assembly_accession": "GCF_000519925.1", "match_id": "./rcn/refseq-NZ-1391495-PRJNA224116-SAMN02333901-GCF_000519925.1-.-Enterococcus_faecalis_EnGen0425.fna"}, {"sample": "10_Enterococcus_faecalis_S17_L001", "top_taxonomy_name": "Enterococcus faecalis ATCC 4200", "distance": 0.00916272, "pvalue": 0.0, "matching": "304/400", "full_taxonomy": "Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; faecalis; ATCC 4200", "taxonomic_species": "Enterococcus faecalis", "taxonomic_genus": "Enterococcus", "taxonomic_family": "Enterococcaceae", "taxonomic_order": "Lactobacillales", "taxonomic_class": "Bacilli", "taxonomic_phylum": "Firmicutes", "taxonomic_superkingdom": "Bacteria", "subspecies": null, "serovar": null, "plasmid": null, "bioproject": "PRJNA224116", "biosample": "SAMN02595252", "taxid": 565642, "assembly_accession": "GCF_000157195.1", "match_id": "./rcn/refseq-NZ-565642-PRJNA224116-SAMN02595252-GCF_000157195.1-.-Enterococcus_faecalis_ATCC_4200.fna"}, {"sample": "10_Enterococcus_faecalis_S17_L001", "top_taxonomy_name": "Enterococcus faecalis ATCC 29212", "distance": 0.00975375, "pvalue": 0.0, "matching": "299/400", "full_taxonomy": "Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; faecalis; ATCC 29212", "taxonomic_species": "Enterococcus faecalis", "taxonomic_genus": "Enterococcus", "taxonomic_family": "Enterococcaceae", "taxonomic_order": "Lactobacillales", "taxonomic_class": "Bacilli", "taxonomic_phylum": "Firmicutes", "taxonomic_superkingdom": "Bacteria", "subspecies": null, "serovar": null, "plasmid": null, "bioproject": "PRJNA224116", "biosample": "SAMN02870637", "taxid": 1201292, "assembly_accession": "GCF_000742975.1", "match_id": "./rcn/refseq-NZ-1201292-PRJNA224116-SAMN02870637-GCF_000742975.1-.-Enterococcus_faecalis_ATCC_29212.fna"}, {"sample": "10_Enterococcus_faecalis_S17_L001", "top_taxonomy_name": "Enterococcus faecalis EnGen0417", "distance": 0.0101152, "pvalue": 0.0, "matching": "296/400", "full_taxonomy": "Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; faecalis; EnGen0417", "taxonomic_species": "Enterococcus faecalis", "taxonomic_genus": "Enterococcus", "taxonomic_family": "Enterococcaceae", "taxonomic_order": "Lactobacillales", "taxonomic_class": "Bacilli", "taxonomic_phylum": "Firmicutes", "taxonomic_superkingdom": "Bacteria", "subspecies": null, "serovar": null, "plasmid": null, "bioproject": "PRJNA224116", "biosample": "SAMN02333893", "taxid": 1391487, "assembly_accession": "GCF_000519765.1", "match_id": "./rcn/refseq-NZ-1391487-PRJNA224116-SAMN02333893-GCF_000519765.1-.-Enterococcus_faecalis_EnGen0417.fna"}]}], "tool_has_database": false}]