Mercurial > repos > iuc > tooldistillator_summarize

annotate test-data/quast/quast_result.tsv @ 6:30a8447539e4 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 9670088b288a41d4f3e4fdee2d021fd50646b886
author iuc
date Tue, 03 Jun 2025 07:20:50 +0000
parents 05c1bcba20c9
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
1 Assembly 10_Enterococcus_faecalis_S17_L001
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
2 # contigs (>= 0 bp) 100
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
3 # contigs (>= 1000 bp) 58
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
4 # contigs (>= 5000 bp) 48
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
5 # contigs (>= 10000 bp) 41
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
6 # contigs (>= 25000 bp) 28
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
7 # contigs (>= 50000 bp) 20
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
8 Total length (>= 0 bp) 3027634
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
9 Total length (>= 1000 bp) 3015201
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
10 Total length (>= 5000 bp) 2996428
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
11 Total length (>= 10000 bp) 2944723
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
12 Total length (>= 25000 bp) 2735277
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
13 Total length (>= 50000 bp) 2421445
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
14 # contigs 62
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
15 Largest contig 436224
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
16 Total length 3017519
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
17 GC (%) 37.31
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
18 N50 99915
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
19 N90 27780
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
20 auN 154096.4
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
21 L50 8
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
22 L90 28
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
23 # total reads 3489582
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
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24 # left 1744791
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
25 # right 1744791
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
26 Mapped (%) 99.85
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
27 Properly paired (%) 98.83
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
28 Avg. coverage depth 230
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
29 Coverage >= 1x (%) 100.0
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
30 # N's per 100 kbp 0.00