Mercurial > repos > iuc > tooldistillator_summarize
view test-data/summarize/bakta_all_output.json @ 2:def7a82d23e1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit d7cada7ddf775e946e218fdc839e6e4c8aac6d80
author | iuc |
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date | Wed, 03 Jul 2024 12:07:36 +0000 |
parents | 05c1bcba20c9 |
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[{"analysis_software_version": "1.8.1", "reference_database_version": "5.0", "analysis_software_name": "bakta", "results": [{"name": "bakta_report", "file_path": "tests/data/dummy/bakta/bakta.json", "hid": "12345", "galaxy_id": null, "content": [{"genome": {"genus": null, "species": null, "strain": null, "complete": true, "gram": "?", "translation_table": 11}, "stats": {"no_sequences": 1, "size": 1330, "gc": 0.4518796992481203, "n_ratio": 0.0, "n50": 1330, "coding_ratio": 0.6203007518796992}, "features": [{"type": "cds", "contig": "contig_1", "start": 413, "stop": 736, "strand": "+", "frame": 2, "gene": null, "product": "hypothetical protein", "db_xrefs": [], "aa_hexdigest": "d9bdebc84195542e775c3d22458b507e", "start_type": "ATG", "rbs_motif": "GGAG/GAGG", "hypothetical": true, "genes": [], "seq_stats": {"molecular_weight": 12072.9082, "isoelectric_point": 10.3678861618}, "id": "IHHALPPJCH_1", "locus": "IHHALP_00005", "edge": null}, {"type": "cds", "contig": "contig_1", "start": 971, "stop": 141, "strand": "-", "frame": 1, "gene": null, "product": "hypothetical protein", "db_xrefs": [], "aa_hexdigest": "1e7027cbe48346e06a83e802a9385584", "start_type": "ATG", "rbs_motif": "AGGA/GGAG/GAGG", "hypothetical": true, "genes": [], "seq_stats": {"molecular_weight": 18866.3258, "isoelectric_point": 7.6965906143}, "id": "IHHALPPJCH_2", "locus": "IHHALP_00010", "edge": true}], "run": {"start": "2024-02-11 00:24:53", "end": "2024-02-11 00:25:06"}, "summary": {"tRNAs": 0, "tmRNAs": 0, "rRNAs": 0, "ncRNAs": 0, "ncRNAregions": 0, "CRISPRarrays": 0, "CDSs": 2, "pseudogenes": 0, "hypotheticals": 2, "signalpeptides": 0, "sORFs": 0, "gaps": 0, "oriCs": 0, "oriVs": 0, "oriTs": 0}}]}, {"name": "annotation_tabular_path", "file_path": "tests/data/dummy/bakta/bakta_annotation.tsv", "hid": "98765", "galaxy_id": null, "content": []}, {"name": "gff_file_path", "file_path": "tests/data/dummy/bakta/bakta_annotation.gff3", "hid": "98765", "galaxy_id": null, "content": []}, {"name": "annotation_genbank_path", "file_path": "tests/data/dummy/bakta/bakta_gbff.gbff", "hid": "98765", "galaxy_id": null, "content": []}, {"name": "annotation_embl_path", "file_path": "tests/data/dummy/bakta/bakta_embl.embl", "hid": "98765", "galaxy_id": null, "content": []}, {"name": "contig_sequences_path", "file_path": "tests/data/dummy/bakta/bakta_contigs_sequences.fna", "hid": "98765", "galaxy_id": null, "content": []}, {"name": "nucleotide_annotation_path", "file_path": "tests/data/dummy/bakta/bakta_nucleotide_annotation.ffn", "hid": "98765", "galaxy_id": null, "content": []}, {"name": "amino_acid_annotation_path", "file_path": "tests/data/dummy/bakta/bakta_aminoacid.faa", "hid": "98765", "galaxy_id": null, "content": []}, {"name": "hypothetical_protein_path", "file_path": "tests/data/dummy/bakta/bakta_hypothetical.faa", "hid": "98765", "galaxy_id": null, "content": []}, {"name": "hypothetical_tabular_path", "file_path": "tests/data/dummy/bakta/bakta_hypothetical.tsv", "hid": "98765", "galaxy_id": null, "content": []}, {"name": "summary_result_path", "file_path": "tests/data/dummy/bakta/bakta_summary.txt", "hid": "98765", "galaxy_id": null, "content": []}, {"name": "plot_file_path", "file_path": "tests/data/dummy/bakta/bakta_plot.svg", "hid": "98765", "galaxy_id": null, "content": []}], "tool_has_database": true}]