Mercurial > repos > iuc > tooldistillator_summarize
view test-data/recentrifuge/rcf_data.tsv @ 3:f3233d395549 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 4225d0fe8f224f56ec8066c705e56f4e8c1d9a9a
| author | iuc |
|---|---|
| date | Mon, 30 Sep 2024 10:16:31 +0000 |
| parents | 05c1bcba20c9 |
| children |
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Samples /storage/scratch/piemari/60579059/recentrifuge/10_Enterococcus_faecalis_S17_L001 /storage/scratch/piemari/60579059/recentrifuge/10_Enterococcus_faecalis_S17_L001 /storage/scratch/piemari/60579059/recentrifuge/10_Enterococcus_faecalis_S17_L001 Details Details Stats count unassigned score Rank Name Id 1 1705098 8766 23.406576938256993 no_rank root 2 1696077 41771 23.395425082794883 superkingdom Bacteria 1224 656 8 2.5291006275765358 phylum Proteobacteria 1236 626 12 2.482047572064056 class Gammaproteobacteria 91347 614 1 2.457941868298954 order Enterobacterales 543 613 320 2.460424106929107 family Enterobacteriaceae 2890311 293 0 3.246096990938595 no_rank Klebsiella/Raoultella group 570 293 0 3.246096990938595 genus Klebsiella 573 37 37 0.8707595857425035 species Klebsiella pneumoniae 1463165 256 256 3.5894074752833425 species Klebsiella quasipneumoniae 28211 14 3 3.5108263106101574 class Alphaproteobacteria 204455 11 0 3.9118522954498163 order Rhodobacterales 31989 11 5 3.9118522954498163 family Rhodobacteraceae 2083206 6 0 5.003000134822521 genus Tritonibacter 379347 6 6 5.003000134822521 species Tritonibacter mobilis 68525 8 2 6.4392025411184886 subphylum delta/epsilon subdivisions 29547 6 0 6.491794757763988 class Epsilonproteobacteria 213849 6 6 6.491794757763988 order Campylobacterales 203691 8 0 2.670556919903863 phylum Spirochaetes 203692 8 0 2.670556919903863 class Spirochaetia 1643686 8 0 2.670556919903863 order Brachyspirales 143786 8 0 2.670556919903863 family Brachyspiraceae 29521 8 0 2.670556919903863 genus Brachyspira 52584 8 0 2.670556919903863 species Brachyspira pilosicoli 759914 8 8 2.670556919903863 strain Brachyspira pilosicoli 95/1000 1783257 9 1 5.666318593923775 no_rank PVC group 204428 8 0 6.1710253562749955 phylum Chlamydiae 204429 8 0 6.1710253562749955 class Chlamydiia 1963360 8 0 6.1710253562749955 order Parachlamydiales 92713 8 0 6.1710253562749955 family Parachlamydiaceae 83551 8 0 6.1710253562749955 genus Parachlamydia 83552 8 0 6.1710253562749955 species Parachlamydia acanthamoebae 765952 8 8 6.1710253562749955 strain Parachlamydia acanthamoebae UV-7 1783270 66 0 2.006752928257857 no_rank FCB group 68336 66 0 2.006752928257857 no_rank Bacteroidetes/Chlorobi group 976 66 0 2.006752928257857 phylum Bacteroidota 117743 16 0 4.41718651898131 class Flavobacteriia 200644 16 0 4.41718651898131 order Flavobacteriales 49546 10 10 5.956891819839705 family Flavobacteriaceae 2762318 6 0 1.8510110175506516 family Weeksellaceae 2782232 6 0 1.8510110175506516 no_rank Chryseobacterium group 59732 6 6 1.8510110175506516 genus Chryseobacterium 200643 50 0 1.2354141792263518 class Bacteroidia 171549 50 0 1.2354141792263518 order Bacteroidales 815 50 0 1.2354141792263518 family Bacteroidaceae 816 50 0 1.2354141792263518 genus Bacteroides 817 50 50 1.2354141792263518 species Bacteroides fragilis 1783272 1653567 1652 23.34001268644121 no_rank Terrabacteria group 1239 1651848 2786 23.34408417992166 phylum Firmicutes 91061 1648513 26463 23.367281250244677 class Bacilli 1385 1549 105 1.5310126165432292 order Bacillales 90964 933 3 1.6488807818855296 family Staphylococcaceae 1279 922 364 1.6529169672137187 genus Staphylococcus 1280 172 172 4.134921158621555 species Staphylococcus aureus 1283 9 9 1.1011853849280868 species Staphylococcus haemolyticus 29382 169 169 0.8554142297734083 species Staphylococcus cohnii 2815305 208 0 0.9949576979684763 species_group Staphylococcus intermedius group 283734 208 208 0.9949576979684763 species Staphylococcus pseudintermedius 2803850 8 0 0.793093163911496 genus Mammaliicoccus 1296 8 8 0.793093163911496 species Mammaliicoccus sciuri 186817 455 134 1.2032272261636583 family Bacillaceae 1386 97 13 1.0549176203970638 genus Bacillus 86661 41 9 1.1850461843452467 species_group Bacillus cereus group 1392 13 13 1.1096346346273416 species Bacillus anthracis 1396 8 8 1.0777632709036333 species Bacillus cereus 1428 11 11 1.6198538082960143 species Bacillus thuringiensis 185979 8 8 0.8301699316132318 no_rank unclassified Bacillus (in: Bacteria) 653685 35 9 1.028818211280399 species_group Bacillus subtilis group 1938374 26 2 0.9773258338876348 species_subgroup Bacillus amyloliquefaciens group 1390 12 12 1.0423283671465575 species Bacillus amyloliquefaciens 492670 12 12 0.8648197655965195 species Bacillus velezensis 150247 21 1 3.6032022418134697 genus Anoxybacillus 247480 14 14 4.178868577006367 species Anoxybacillus caldiproteolyticus 2639704 6 0 2.672897239210963 no_rank unclassified Anoxybacillus 1636720 6 6 2.672897239210963 species Anoxybacillus sp. PDR2 2837504 203 1 0.6082599491575995 genus Heyndrickxia 38875 195 195 0.4574625508975431 species Heyndrickxia oleronia 1476025 7 7 4.842030537629395 species Heyndrickxia vini 186818 10 4 0.8776692512548797 family Planococcaceae 1372 6 6 1.183068030563869 genus Planococcus 186820 14 2 0.8690075588200579 family Listeriaceae 1637 12 12 0.9052546679909343 genus Listeria 186822 17 0 1.2111399791152304 family Paenibacillaceae 44249 17 17 1.2111399791152304 genus Paenibacillus 186823 6 6 0.7696180525672581 family Alicyclobacillaceae 539002 9 9 0.6676970796195962 no_rank Bacillales incertae sedis 186826 1620501 13929 23.438078410183238 order Lactobacillales 1300 6499 343 8.950766344236197 family Streptococcaceae 1301 5588 912 9.324347536844721 genus Streptococcus 1307 16 16 1.5477643732288435 species Streptococcus suis 1308 730 730 3.96659053092353 species Streptococcus thermophilus 1311 109 109 2.1198590513226216 species Streptococcus agalactiae 1313 43 43 1.30377206625794 species Streptococcus pneumoniae 1314 13 13 1.1410197570750837 species Streptococcus pyogenes 1348 15 15 4.238633601332688 species Streptococcus parauberis 45634 304 0 4.466371036054079 species Streptococcus cristatus 1302863 304 304 4.466371036054079 strain Streptococcus cristatus AS 1.3089 119603 213 4 5.907772289285088 species_group Streptococcus dysgalactiae group 1336 209 0 6.002867303618146 species Streptococcus equi 40041 209 209 6.002867303618146 subspecies Streptococcus equi subsp. zooepidemicus 315405 3221 1 12.057447943466315 species Streptococcus gallolyticus 53354 3220 0 12.06105003425735 subspecies Streptococcus gallolyticus subsp. gallolyticus 990317 3220 3220 12.06105003425735 strain Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 2608887 12 12 4.040673378780668 no_rank unclassified Streptococcus 1357 568 16 1.8038867754253172 genus Lactococcus 1358 85 17 2.9759019163062628 species Lactococcus lactis 1360 68 9 3.1673295430623827 subspecies Lactococcus lactis subsp. lactis 1046624 59 59 3.3693793853069898 strain Lactococcus lactis subsp. lactis IO-1 1359 97 97 2.8685547465494197 species Lactococcus cremoris 1363 213 213 1.0441656096319267 species Lactococcus garvieae 1366 129 129 1.528012433305227 species Lactococcus raffinolactis 2643510 28 1 2.0332664205808824 no_rank unclassified Lactococcus 2816910 27 27 2.091019486184282 species Lactococcus sp. LG1267 33958 153 39 1.2333772766877353 family Lactobacillaceae 1253 9 9 1.2609888230893362 genus Pediococcus 1578 28 17 1.0157277094629367 genus Lactobacillus 147802 11 11 1.2357711002890166 species Lactobacillus iners 46255 6 6 0.7397900915153407 genus Weissella 2742598 9 9 1.419764724364403 genus Limosilactobacillus 2759736 6 6 1.6054278158689648 genus Lacticaseibacillus 2767842 10 0 1.2858255140682764 genus Lactiplantibacillus 1590 10 10 1.2858255140682764 species Lactiplantibacillus plantarum 2767885 17 4 1.7265763187666388 genus Latilactobacillus 1599 13 13 1.5066888443924613 species Latilactobacillus sakei 2767886 9 0 1.398328241873101 genus Levilactobacillus 1580 9 9 1.398328241873101 species Levilactobacillus brevis 2767887 14 7 0.598606789402397 genus Ligilactobacillus 1624 7 7 0.7636517432199416 species Ligilactobacillus salivarius 2767889 6 6 1.2492772274230424 genus Loigolactobacillus 81852 1599685 921 23.559535176620216 family Enterococcaceae 1350 1598695 64275 23.566991570231448 genus Enterococcus 1351 1531613 1510052 23.668248263678578 species Enterococcus faecalis 226185 21 21 0.38435018791238007 strain Enterococcus faecalis V583 474186 33 33 0.40064354059738017 strain Enterococcus faecalis OG1RF 565651 1670 1670 2.8545355118080313 strain Enterococcus faecalis ARO1/DG 699186 2753 2753 3.57789453794821 strain Enterococcus faecalis R712 1157365 24 24 0.9432657281093839 strain Enterococcus faecalis EnGen0107 1201292 2351 2351 8.186838413433843 strain Enterococcus faecalis ATCC 29212 1206105 1218 1218 2.0340956240102512 strain Enterococcus faecalis D32 1287066 13491 13491 3.6306104825402294 strain Enterococcus faecalis DENG1 1352 1782 1776 2.591998705389451 species Enterococcus faecium 1158600 6 6 1.4376070661915603 strain Enterococcus faecium ATCC 8459 = NRRL B-2354 1353 6 6 1.3396929056537363 species Enterococcus gallinarum 1354 129 129 1.2135478557261825 species Enterococcus hirae 33945 176 176 3.4731254588207925 species Enterococcus avium 37734 117 117 3.6337486681979128 species Enterococcus casseliflavus 44008 163 163 1.2180773813893313 species Enterococcus cecorum 53345 183 183 4.158614968772894 species Enterococcus durans 53346 18 18 3.7767835297172416 species Enterococcus mundtii 118060 36 36 2.495243825038598 species Enterococcus rotai 160453 33 33 3.5229405344436837 species Enterococcus gilvus 1805431 8 8 2.580826752808647 species Enterococcus saigonensis 2005703 14 14 7.807370084132559 species Enterococcus wangshanyuanii 2608891 142 11 1.764832744365358 no_rank unclassified Enterococcus 2582830 131 131 1.804257856185198 species Enterococcus sp. M190262 2737 50 12 1.5892104699251237 genus Vagococcus 218144 11 11 2.7248547482928465 species Vagococcus carniphilus 633807 21 21 1.4273307820801826 species Vagococcus penaei 2714947 6 6 1.6019980684696447 species Vagococcus hydrophili 33969 9 0 1.4531669487922143 genus Melissococcus 33970 9 9 1.4531669487922143 species Melissococcus plutonius 51668 10 10 1.221592140263402 genus Tetragenococcus 186827 24 1 1.4419914958056321 family Aerococcaceae 1375 17 7 1.6149265102205854 genus Aerococcus 1377 10 10 1.5748583749325622 species Aerococcus viridans 2689587 6 0 0.8603355588458771 genus Suicoccus 2036206 6 6 0.8603355588458771 species Suicoccus acidiformans 186828 211 2 2.818108437721708 family Carnobacteriaceae 2747 197 89 2.8269564507766582 genus Carnobacterium 2751 21 21 5.768927251679546 species Carnobacterium maltaromaticum 147709 35 0 0.8868865283829857 species Carnobacterium inhibens 1266845 35 35 0.8868865283829857 subspecies Carnobacterium inhibens subsp. gilichinskyi 257487 52 0 1.5168016352448308 no_rank unclassified Carnobacterium 208596 52 52 1.5168016352448308 species Carnobacterium sp. 17-4 1470540 12 12 2.9328747714756394 genus Jeotgalibaca 186801 420 9 1.7953874695058052 class Clostridia 186802 411 41 1.75553519563304 order Eubacteriales 31979 44 0 2.0738127026600917 family Clostridiaceae 1485 44 9 2.0738127026600917 genus Clostridium 1491 6 6 5.854468629326717 species Clostridium botulinum 1502 29 1 1.5883848967108667 species Clostridium perfringens 883064 28 28 1.5400709119295324 strain Clostridium perfringens F262 186803 19 10 5.110117753725923 family Lachnospiraceae 207244 9 0 9.481396423792944 genus Anaerostipes 649756 9 9 9.481396423792944 species Anaerostipes hadrus 186804 307 1 1.615475527020151 family Peptostreptococcaceae 1870884 306 0 1.620142878684913 genus Clostridioides 1496 306 306 1.620142878684913 species Clostridioides difficile 526524 40 0 3.077947620267509 class Erysipelotrichia 526525 40 0 3.077947620267509 order Erysipelotrichales 128827 40 40 3.077947620267509 family Erysipelotrichaceae 1737404 89 0 6.446806729756411 class Tissierellia 1737405 89 0 6.446806729756411 order Tissierellales 1570339 89 0 6.446806729756411 family Peptoniphilaceae 162289 89 1 6.446806729756411 genus Peptoniphilus 54006 88 88 6.502217253636913 species Peptoniphilus ivorii 201174 50 0 1.8529176000849532 phylum Actinobacteria 1760 50 10 1.8529176000849532 class Actinomycetia 85006 7 7 6.253699226891209 order Micrococcales 85011 33 0 0.7209126998313955 order Streptomycetales 2062 33 0 0.7209126998313955 family Streptomycetaceae 1883 33 5 0.7209126998313955 genus Streptomyces 2593676 28 0 0.781301999103657 no_rank unclassified Streptomyces 2099583 22 22 0.6282086319176973 species Streptomyces sp. ICC1 2099584 6 6 1.3426443454521761 species Streptomyces sp. ICC4 544448 17 1 1.7949411008239513 phylum Tenericutes 31969 7 0 1.295527684915119 class Mollicutes 2085 7 0 1.295527684915119 order Mycoplasmatales 2092 7 1 1.295527684915119 family Mycoplasmataceae 2767358 6 6 1.4264149521288634 genus Mycoplasmopsis 2790996 9 1 2.2705782121667033 order Mycoplasmoidales 2895623 8 0 1.396993081280134 family Metamycoplasmataceae 2895509 8 0 1.396993081280134 genus Metamycoplasma 2098 8 8 1.396993081280134 species Metamycoplasma hominis 2157 31 0 4.238254159773117 superkingdom Archaea 28890 7 0 2.6483733912147787 phylum Euryarchaeota 2283794 7 0 2.6483733912147787 no_rank Methanomada group 183925 7 0 2.6483733912147787 class Methanobacteria 2158 7 0 2.6483733912147787 order Methanobacteriales 2159 7 0 2.6483733912147787 family Methanobacteriaceae 2172 7 1 2.6483733912147787 genus Methanobrevibacter 83816 6 0 2.9956069978485034 species Methanobrevibacter ruminantium 634498 6 6 2.9956069978485034 strain Methanobrevibacter ruminantium M1 1783275 24 2 4.701969383935966 no_rank TACK group 651137 22 0 4.833030004650398 phylum Thaumarchaeota 31932 22 0 4.833030004650398 order Nitrosopumilales 338190 22 0 4.833030004650398 family Nitrosopumilaceae 338191 22 0 4.833030004650398 genus Nitrosopumilus 1580092 22 22 4.833030004650398 species Nitrosopumilus adriaticus 2759 158 0 3.7577410515006657 superkingdom Eukaryota 33154 158 0 3.7577410515006657 no_rank Opisthokonta 4751 25 0 1.1301603777565976 kingdom Fungi 451864 25 0 1.1301603777565976 subkingdom Dikarya 4890 25 0 1.1301603777565976 phylum Ascomycota 716545 25 0 1.1301603777565976 no_rank saccharomyceta 147537 25 0 1.1301603777565976 subphylum Saccharomycotina 4891 25 0 1.1301603777565976 class Saccharomycetes 4892 25 0 1.1301603777565976 order Saccharomycetales 115784 10 0 1.3132361338061045 family Phaffomycetaceae 460517 10 0 1.3132361338061045 genus Komagataella 460519 10 0 1.3132361338061045 species Komagataella phaffii 644223 10 10 1.3132361338061045 strain Komagataella phaffii GS115 2916678 15 0 1.008109873723593 no_rank CUG-Ser1 clade 766764 15 0 1.008109873723593 family Debaryomycetaceae 1535325 15 0 1.008109873723593 no_rank Candida/Lodderomyces clade 5475 15 0 1.008109873723593 genus Candida 42374 15 0 1.008109873723593 species Candida dubliniensis 573826 15 15 1.008109873723593 strain Candida dubliniensis CD36 33208 133 0 4.251647193181881 kingdom Metazoa 6072 133 0 4.251647193181881 no_rank Eumetazoa 33213 133 0 4.251647193181881 no_rank Bilateria 33511 133 0 4.251647193181881 no_rank Deuterostomia 7711 133 0 4.251647193181881 phylum Chordata 89593 133 0 4.251647193181881 subphylum Craniata 7742 133 0 4.251647193181881 no_rank Vertebrata 7776 133 0 4.251647193181881 no_rank Gnathostomata 117570 133 0 4.251647193181881 no_rank Teleostomi 117571 133 0 4.251647193181881 no_rank Euteleostomi 8287 133 0 4.251647193181881 superclass Sarcopterygii 1338369 133 0 4.251647193181881 no_rank Dipnotetrapodomorpha 32523 133 0 4.251647193181881 no_rank Tetrapoda 32524 133 0 4.251647193181881 no_rank Amniota 40674 133 0 4.251647193181881 class Mammalia 32525 133 0 4.251647193181881 no_rank Theria 9347 133 0 4.251647193181881 no_rank Eutheria 1437010 133 0 4.251647193181881 no_rank Boreoeutheria 314146 133 0 4.251647193181881 superorder Euarchontoglires 9443 133 0 4.251647193181881 order Primates 376913 133 0 4.251647193181881 suborder Haplorrhini 314293 133 0 4.251647193181881 infraorder Simiiformes 9526 133 0 4.251647193181881 parvorder Catarrhini 314295 133 0 4.251647193181881 superfamily Hominoidea 9604 133 0 4.251647193181881 family Hominidae 207598 133 0 4.251647193181881 subfamily Homininae 9605 133 0 4.251647193181881 genus Homo 9606 133 133 4.251647193181881 species Homo sapiens 10239 66 0 4.761562706518553 superkingdom Viruses 2731341 41 0 4.775296347886017 no_rank Duplodnaviria 2731360 41 0 4.775296347886017 kingdom Heunggongvirae 2731618 41 0 4.775296347886017 phylum Uroviricota 2731619 41 0 4.775296347886017 class Caudoviricetes 10699 41 0 4.775296347886017 family Siphoviridae 196894 41 0 4.775296347886017 no_rank unclassified Siphoviridae 1747326 41 41 4.775296347886017 species Enterococcus phage vB_EfaS_IME197 2732004 25 0 4.7390395346759115 no_rank Varidnaviria 2732005 25 0 4.7390395346759115 kingdom Bamfordvirae 2732007 25 0 4.7390395346759115 phylum Nucleocytoviricota 2732523 25 0 4.7390395346759115 class Megaviricetes 2732554 25 0 4.7390395346759115 order Imitervirales 549779 25 0 4.7390395346759115 family Mimiviridae 985780 25 0 4.7390395346759115 no_rank unclassified Mimiviridae 985782 25 0 4.7390395346759115 species Moumouvirus 1269028 25 25 4.7390395346759115 no_rank Acanthamoeba polyphaga moumouvirus