Mercurial > repos > iuc > tracy_align
comparison test-data/out1.align3.fasta @ 0:80e3f678b947 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tracy commit 8a1c82789c6ef97008ecf8f55e060422fd72f217"
| author | iuc |
|---|---|
| date | Tue, 12 Oct 2021 14:20:14 +0000 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:80e3f678b947 |
|---|---|
| 1 >Alt1 (Estimated allelic Fraction: 0.52) | |
| 2 TCNGCNGGNGTNNTCCGTATTTTNNTTGGATCCNCATTCATAGCAAACACCANAAATCCATATTGGGACCACAA | |
| 3 TCCCAACAAAGACCACTGGACAGAAGCCAACAAGGTAGGAGTGGGAGCATTCGGGCCTGGGTTCACTCCCCCAC | |
| 4 ACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAAGGCATGCTGACAACATTACCAGCAAATCCGCCTCCTGCC | |
| 5 TCCACCAATCGACAGTCAGGAAGGCAGCCTACCCCAATCACTCCACCTTTGAGAGACACTCATCCTCAGGCCAT | |
| 6 GCAGTGGAATTCCACAACATTCCACCAAGCTCTGCAGGATCCCAGAGTAAATCCTGCTGGTGGCTCCAGTTCCG | |
| 7 GAACAGTGAACCCTGTTCCGACTACTGCCTCACTCATCTCGTCAATCTTCTCGAGGATTGGGGACCCTGCACCG | |
| 8 AACATGGAAAGCATCACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAA | |
| 9 AATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCTCCCGTGTGTC | |
| 10 TTGGCCAAAATTCGCAGTCCCAAACCTCCAGTCACTCACCAACCTCTTGTCCTCCAATTTGTCCTGCCTATCGC | |
| 11 TGGATGTGTCTGCGGCGGTTTATCATCTTCCTCTTCATCGTGCTGCTATGCCTCATCATCCTGTTGGGTTCGTC | |
| 12 TGCACTATCAAAGGTATGTTGCCCCGGTTTGTCNTTNNTAATTCCAAGGATCATGAAAGCCACCCACTACGGGA | |
| 13 ACCNTTGCCGCAAGCTGCACGACTCATTTCTCAAAGGAAANTCNANGNTTTTCCCTCATNGTTGCTGTTCAAAA | |
| 14 GCTTCGGACGGAAAATGCACATTGTAGTTNCNNATCCCATCATCATGGGNTTTGGGAAATNCCATATGGTANNG | |
| 15 GGCNNNAGCCCGCNTNNCCT | |
| 16 >Alt2 (Estimated allelic Fraction: 0.28) | |
| 17 TANTTNTTNGGNNGTCACTCGCCNNGGGGATCANAGTTATGTGGGGACATTANTCATTTTGTTTGGGATTTCCC | |
| 18 TCTCTTCTTAGAACACTGGACATAAGCCAACAAGGTAGGAGTGGGAGCATTCGGGCCTGGGTTCACTCCCCCAC | |
| 19 ACGGAGGCCTTTTGGGGTGGAGCACTCAGGCTCAAGGCATGCTGACAACATTACCAGCAAATCCGCCTCCTGCC | |
| 20 TCCACCAATCGACAGTCAGGAAGGCAGCCTACCCAAATTACACCACCTTTGAGAGACACTCATCCTCAGGCCAT | |
| 21 GCAGTGGAATTCCACAACATGCCACCAACCTCTGCAGGATCCCAAAGTAAGTCCTGCTGGTGGCTCCAGTTCCG | |
| 22 GAACAGTGAACCCTGTTCCGACTACAGCCTCACTCATCTCGTCAACCTTCTCGAGGATTGGGGACCCTGCACCG | |
| 23 AACATGGACAGCATCACATCAGGATTCCGATGACCCCCGCTCATGTTACAAGCGGGGTTTTTCTTGTTGACAAA | |
| 24 AATAAACAGGATACCGCGTAGACAACAGGCGTGGTGGACTTCTCTCTCTTTTGGAAGGGGAGGACCTTTGTGTG | |
| 25 ATGGTGGGAAATCTTAGTCCCTCGCCTCCAATCACTCTCCACCCTCTTGTGGGCCTAATTGAGGTGAGTCCCGC | |
| 26 TGAAAGAAGTGGCAGCGGGGTATCACATACCTCTTCATCTTGCGGGAGAGCCGCCACGTCCTGTGTGGGTGAGC | |
| 27 TCCCCCAGAACAAAAGGGTGTTGCGGGGGGGGGNGGNNACAAACCGCGGGGGGAAGGAGGGAACCCACTAAAAG | |
| 28 AACNGGTGCGGTTTCAAAAAAGGGACTGTTTAGTTGAGAANGGNCNGNCATTTTTCATANTTTCTGTGGGTGAG | |
| 29 TAAAAAACACGGGGGACGCAGATGGGAGGNTNNTCCAAACACCAAAAAANGAGGGAGGGGNAATTTATTCTNNA | |
| 30 AGGNNNGCGCAAGNCNNTTC | |
| 31 | |
| 32 Alignment score: 730 | |
| 33 #------------------------------------------------------------------------- | |
| 34 | |
| 35 Alt1 1 TCNGCNGGNGTNNTCCGTATTTTNNTTGGATCCNCATTCATAGCAAACACCANAAATCCA | |
| 36 | | | || || | || ||||| | || | ||| || || | |
| 37 Alt2 1 TANTTNTTNGGNNGTCACTCGCCNNGGGGATCANAGTTATGTGGGGACATTANTCATTTT | |
| 38 | |
| 39 Alt1 61 TATTGGGACCACAATCCCAACAAAGACCACTGGACAGAAGCCAACAAGGTAGGAGTGGGA | |
| 40 |||||| | || | | ||| ||||||||| ||||||||||||||||||||||| | |
| 41 Alt2 61 GTTTGGGATTTCCCTCTCTTCTTAGAACACTGGACATAAGCCAACAAGGTAGGAGTGGGA | |
| 42 | |
| 43 Alt1 121 GCATTCGGGCCTGGGTTCACTCCCCCACACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCT | |
| 44 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
| 45 Alt2 121 GCATTCGGGCCTGGGTTCACTCCCCCACACGGAGGCCTTTTGGGGTGGAGCACTCAGGCT | |
| 46 | |
| 47 Alt1 181 CAAGGCATGCTGACAACATTACCAGCAAATCCGCCTCCTGCCTCCACCAATCGACAGTCA | |
| 48 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
| 49 Alt2 181 CAAGGCATGCTGACAACATTACCAGCAAATCCGCCTCCTGCCTCCACCAATCGACAGTCA | |
| 50 | |
| 51 Alt1 241 GGAAGGCAGCCTACCCCAATCACTCCACCTTTGAGAGACACTCATCCTCAGGCCATGCAG | |
| 52 |||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| | |
| 53 Alt2 241 GGAAGGCAGCCTACCCAAATTACACCACCTTTGAGAGACACTCATCCTCAGGCCATGCAG | |
| 54 | |
| 55 Alt1 301 TGGAATTCCACAACATTCCACCAAGCTCTGCAGGATCCCAGAGTAAATCCTGCTGGTGGC | |
| 56 |||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||| | |
| 57 Alt2 301 TGGAATTCCACAACATGCCACCAACCTCTGCAGGATCCCAAAGTAAGTCCTGCTGGTGGC | |
| 58 | |
| 59 Alt1 361 TCCAGTTCCGGAACAGTGAACCCTGTTCCGACTACTGCCTCACTCATCTCGTCAATCTTC | |
| 60 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| | |
| 61 Alt2 361 TCCAGTTCCGGAACAGTGAACCCTGTTCCGACTACAGCCTCACTCATCTCGTCAACCTTC | |
| 62 | |
| 63 Alt1 421 TCGAGGATTGGGGACCCTGCACCGAACATGGAAAGCATCACATCAGGATTCCTAGGACCC | |
| 64 |||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||| | |
| 65 Alt2 421 TCGAGGATTGGGGACCCTGCACCGAACATGGACAGCATCACATCAGGATTCCGATGACCC | |
| 66 | |
| 67 Alt1 481 CTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAAAATCCTCACAATACCGCAGAGT | |
| 68 | |||| ||||||| |||||||||||||||||||||||||| || ||||||| || | |
| 69 Alt2 481 CCGCTCATGTTACAAGCGGGGTTTTTCTTGTTGACAAAAATAAACAGGATACCGCGTAGA | |
| 70 | |
| 71 Alt1 541 CTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCTCCCGTGTGTCTTGGCCAA | |
| 72 | | | ||||||||||||||||| |||| | |||||| || ||||| ||| | |
| 73 Alt2 541 CAACAGGCGTGGTGGACTTCTCTCTCTTTTGGAAGGGGAGGACCTTTGTGTGATGGTGGG | |
| 74 | |
| 75 Alt1 601 AATTCGCAGTCCCAAACCTCCAGTCACTCACCAACCTCTTGTCCTCCAATTTGTCCTGCC | |
| 76 || || |||||| |||||| |||||| ||| |||||||| || | ||| || | |
| 77 Alt2 601 AAATCTTAGTCCCTCGCCTCCAATCACTCTCCACCCTCTTGTGGGCCTAATTGAGGTGAG | |
| 78 | |
| 79 Alt1 661 TATCGCTGGATGTGTCTGCGGCGGTTTATCATCTTCCTCTTCATCGTGCTGCTATGCCTC | |
| 80 | ||||| | | || |||| ||||| | |||||||||| ||| | ||| | | |
| 81 Alt2 661 TCCCGCTGAAAGAAGTGGCAGCGGGGTATCACATACCTCTTCATCTTGCGGGAGAGCCGC | |
| 82 | |
| 83 Alt1 721 ATCATCCTGT-TGGGTTCG-TCTGCACTATCAAAGGTATGTTGCCCCGGTTTGTCNTTNN | |
| 84 | |||||| ||||| | || | | |||| | |||||| || | | || | |
| 85 Alt2 721 CACGTCCTGTGTGGGTGAGCTCCCCCAGAACAAAAGGGTGTTGCGGGGGGGGG--NGGNN | |
| 86 | |
| 87 Alt1 779 TAATTCCAAGGATC-ATGAAAGCCACCCACTACGGGAACCNTTGCCGC-----AAGCTGC | |
| 88 | || || | | | | |||||||| |||| ||| | || | | |
| 89 Alt2 779 ACAAACCGCGGGGGGAAGGAGGGAACCCACTAAAAGAACNGGTGCGGTTTCAAAAAAGGG | |
| 90 | |
| 91 Alt1 833 ACGACTCATTTCTCAAAGGAAANTCNANGNTTTTCCCTCATNGTTGCTGT-------TCA | |
| 92 || | | || || || || | |||| |||| || |||| | | | |
| 93 Alt2 839 ACTGTTTAGTTGAGAANGGN----CNGNCATTTT---TCATANTTTCTGTGGGTGAGTAA | |
| 94 | |
| 95 Alt1 886 AAAGCTTCGGACGGAAAATGCACATTGTAGTTNCNNATCCCATCATCAT-----GGGNTT | |
| 96 ||| | |||| | ||| || | || | || ||| | || || | | | |
| 97 Alt2 892 AAAAC-----ACGGGGGACGCAGATGGGAGG-NTNN-TCCAAACACCAAAAAANGAGGGA | |
| 98 | |
| 99 Alt1 941 TGGGAAATNCCATATGGTANNGGGCNNNAGCCCGCNTNNCCT | |
| 100 ||| ||| ||| | | || || || | | || | |
| 101 Alt2 945 GGGGNAATT---TATTCTNNAAGGNNNGCGCAAG-NCNNTTC | |
| 102 | |
| 103 #------------------------------------------------------------------------- | |
| 104 #------------------------------------------------------------------------- | |
| 105 | |
| 106 |