Mercurial > repos > iuc > tracy_align
comparison test-data/out1.txt @ 0:80e3f678b947 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tracy commit 8a1c82789c6ef97008ecf8f55e060422fd72f217"
| author | iuc |
|---|---|
| date | Tue, 12 Oct 2021 14:20:14 +0000 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:80e3f678b947 |
|---|---|
| 1 >Alt | |
| 2 TTTTTTTTTGAGCGGGTCGAACCGTCACGAAAAGAAAAGGGGAAGAACCATCAGCAGGAGTAATCCGTATTTTA | |
| 3 ATTGGATCCACATTCATAGCAAACACCAAAAATCCATATTGGGACCACAATCCCAACAAAGACCACTGGACAGA | |
| 4 AGCCAACAAGGTAGGAGTGGGAGCATTCGGGCCTGGGTTCACTCCCCCACACGGAGGCCTTTTGGGGTGGAGCC | |
| 5 CTCAGGCTCAAGGCATGCTGACAACATTACCAGCAAATCCGCCTCCTGCCTCCACCAATCGACAGTCAGGAAGG | |
| 6 CAGCCTACCCCAATCACTCCACCTTTGAGAGACACTCATCCTCAGGCCATGCAGTGGAATTCCACAACATTCCA | |
| 7 CCAAGCTCTGCAGGATCCCAGAGTAAATCCTGCTGGTGGCTCCAGTTCCGGAACAGTGAACCCTGTTCCGACTA | |
| 8 CTGCCTCACTCATCTCGTCAATCTTCTCGAGGATTGGGGACCCTGCACCGAACATGGAAAGCATCACATCAGGA | |
| 9 TTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAAAATCCTCACAATACCGCAGAGTCT | |
| 10 AGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCTCCCGTGTGTCTTGGCCAAAATTCTCAGTCCCAAA | |
| 11 CCTCCAGTCACTCACCAACCTCTTGTCCTCCAATTTGTCCTGCCTATCGCTGGATGTGTCTGCGGCGGTTTATC | |
| 12 ATATTCCTCTTCATCGTGCTGCTATGCCTCATCATCCTGTTGGGTTCGTCTGCACCATCAAAAGAATGTTGCCC | |
| 13 CGGGTTGTGATTAAAAATTCCAAGGAGCAAGAAAGCCACCCACTACGGGAACCAGGGCCGGAAGCTGAACAAGT | |
| 14 CATTTTTCAAAGGAAAATGAAAGATTTTCTTTCTTATTTGTGGGGGAAAAGCAAAAAAAGGAAAAAGGAAATTG | |
| 15 GGGTTACAAACCCCACCCCCAAGGGATTTGGGAAATACCATATTTTAAAGGGGAAAGGGCCGCATAACCCATTA | |
| 16 AAAATTGCATATTTTAAATTTTTTTTTTTTGAGAAAGAGGGGGGAC | |
| 17 >Ref X75657.1 Human hepatitis virus genotype E Bas preS1 preS2 S C X antigens core antigen X protein and polymerase:1-718 forward | |
| 18 TTCCACAACATTCCACCAAGCTCTGCAGGATCCCAGAGTAAGAGGCCTGTATTTTCCTGCTGGTGGCTCCAGTT | |
| 19 CCGGAACAGTGAACCCTGTTCCGACTACTGCCTCACTCATCTCGTCAATCTTCTCGAGGATTGGGGACCCTGCA | |
| 20 CCGAACATGGAAAGCATCACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGAC | |
| 21 AAAAATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCTCCCGTGT | |
| 22 GTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAGTCACTCACCAACCTCTTGTCCTCCAATTTGTCCTGGCTAT | |
| 23 CGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCT | |
| 24 TCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCATCAACCACCAGTACGGGACCCTGCC | |
| 25 GAACCTGCACGACTCTTGCTCAAGGAACCTCTATGTTTCCCTCATGTTGCTGTTCAAAACCTTCGGACGGAAAT | |
| 26 TGCACTTGTATTCCCATCCCATCATCATGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTC | |
| 27 CTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGCCGGGCTTTCCCCC | |
| 28 | |
| 29 Alignment score: -906 | |
| 30 #------------------------------------------------------------------------- | |
| 31 | |
| 32 Alt 1 TTTTTTTTTGAGCGGGTCGAACCGTCACGAAAAGAAAAGGGGAAGAACCATCAGCAGGAG | |
| 33 | |
| 34 Ref 1 ------------------------------------------------------------ | |
| 35 | |
| 36 Alt 61 TAATCCGTATTTTAATTGGATCCACATTCATAGCAAACACCAAAAATCCATATTGGGACC | |
| 37 | |
| 38 Ref 1 ------------------------------------------------------------ | |
| 39 | |
| 40 Alt 121 ACAATCCCAACAAAGACCACTGGACAGAAGCCAACAAGGTAGGAGTGGGAGCATTCGGGC | |
| 41 | |
| 42 Ref 1 ------------------------------------------------------------ | |
| 43 | |
| 44 Alt 181 CTGGGTTCACTCCCCCACACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAAGGCATGC | |
| 45 | |
| 46 Ref 1 ------------------------------------------------------------ | |
| 47 | |
| 48 Alt 241 TGACAACATTACCAGCAAATCCGCCTCCTGCCTCCACCAATCGACAGTCAGGAAGGCAGC | |
| 49 | |
| 50 Ref 1 ------------------------------------------------------------ | |
| 51 | |
| 52 Alt 301 CTACCCCAATCACTCCACCTTTGAGAGACACTCATCCTCAGGCCATGCAGTGGAATTCCA | |
| 53 ||||| | |
| 54 Ref 1 -------------------------------------------------------TTCCA | |
| 55 | |
| 56 Alt 361 CAACATTCCACCAAGCTCTGCAGGATCCCAGAGTAAA------------TCCTGCTGGTG | |
| 57 |||||||||||||||||||||||||||||||||||| ||||||||||| | |
| 58 Ref 6 CAACATTCCACCAAGCTCTGCAGGATCCCAGAGTAAGAGGCCTGTATTTTCCTGCTGGTG | |
| 59 | |
| 60 Alt 409 GCTCCAGTTCCGGAACAGTGAACCCTGTTCCGACTACTGCCTCACTCATCTCGTCAATCT | |
| 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
| 62 Ref 66 GCTCCAGTTCCGGAACAGTGAACCCTGTTCCGACTACTGCCTCACTCATCTCGTCAATCT | |
| 63 | |
| 64 Alt 469 TCTCGAGGATTGGGGACCCTGCACCGAACATGGAAAGCATCACATCAGGATTCCTAGGAC | |
| 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
| 66 Ref 126 TCTCGAGGATTGGGGACCCTGCACCGAACATGGAAAGCATCACATCAGGATTCCTAGGAC | |
| 67 | |
| 68 Alt 529 CCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAAAATCCTCACAATACCGCAGA | |
| 69 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
| 70 Ref 186 CCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAAAATCCTCACAATACCGCAGA | |
| 71 | |
| 72 Alt 589 GTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCTCCCGTGTGTCTTGGCC | |
| 73 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
| 74 Ref 246 GTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCTCCCGTGTGTCTTGGCC | |
| 75 | |
| 76 Alt 649 AAAATTCTCAGTCCCAAACCTCCAGTCACTCACCAACCTCTTGTCCTCCAATTTGTCCTG | |
| 77 ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
| 78 Ref 306 AAAATTCGCAGTCCCCAACCTCCAGTCACTCACCAACCTCTTGTCCTCCAATTTGTCCTG | |
| 79 | |
| 80 Alt 709 CCTATCGCTGGATGTGTCTGCGGCGGTTTATCATATTCCTCTTCATCGTGCTGCTATGCC | |
| 81 |||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| | |
| 82 Ref 366 GCTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCC | |
| 83 | |
| 84 Alt 769 TCATCATCCTGTTGGGTTCGTCTGCACCATCAAAAGAATGTTGCCCCGGGTTGTGATTAA | |
| 85 ||||| || |||| ||||| |||| || |||| | | ||||||||| | |||| | | |
| 86 Ref 426 TCATCTTCTTGTT-GGTTCTTCTGGACTATCA-AGGTATGTTGCCC--GTTTGTCCT--C | |
| 87 | |
| 88 Alt 829 AAATTCCAAGGAGCAAGAAAGCCACCCACTACGGGAACCAGGGCCGGAAGCTGAACAAGT | |
| 89 ||||||| ||| || || ||| ||| ||||||| || |||| || ||| || | | | |
| 90 Ref 480 TAATTCCA-GGATCATCAA--CCA-CCAGTACGGGACCC--TGCCG-AACCTGCACGACT | |
| 91 | |
| 92 Alt 889 CATTTTTCAAAGGAAAATGAAAGATTTTCTTTCTTATTTGTGGGGGAAAAGCAAAAAAAG | |
| 93 | || |||| |||| | | | |||| || | ||| | |||| | | | | |
| 94 Ref 533 C-TTGCTCAA-GGAACCTCTATG--TTTCCCTCAT-GTTGCTGTTCAAAACCTTCGGACG | |
| 95 | |
| 96 Alt 949 GAAAAAGGAAATTGGGGTTACAAACCCCACCCCCAAGGGATTTGGGAAATACCATATTTT | |
| 97 |||| | | ||| | | | |||| | || ||| ||| ||||| | ||| | |
| 98 Ref 588 GAAATTGCAC-TTGTA--TTCCCATCCCATCATCATGGGCTTTCGGAAAATTCCTATGGG | |
| 99 | |
| 100 Alt 1009 AAAGGGGAAAGGGCCGCATAACCCATTAAAAATTGCATATTTTA-AATTTTTTTTTTTTG | |
| 101 | ||| | ||| | || | || | |||| | | ||| || | |
| 102 Ref 645 AGTGGGCCTCAGCCCGTTTCTCC---------TGGCTCAGTTTACTAGTGCCATTTGTTC | |
| 103 | |
| 104 Alt 1068 AGAAAGAGGGGGGAC-------- | |
| 105 || | || | | |
| 106 Ref 696 AGTGGTTCGCCGGGCTTTCCCCC | |
| 107 | |
| 108 #------------------------------------------------------------------------- | |
| 109 #------------------------------------------------------------------------- | |
| 110 | |
| 111 |