Mercurial > repos > iuc > tracy_align
diff test-data/out1.txt @ 0:80e3f678b947 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tracy commit 8a1c82789c6ef97008ecf8f55e060422fd72f217"
| author | iuc |
|---|---|
| date | Tue, 12 Oct 2021 14:20:14 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/out1.txt Tue Oct 12 14:20:14 2021 +0000 @@ -0,0 +1,111 @@ +>Alt +TTTTTTTTTGAGCGGGTCGAACCGTCACGAAAAGAAAAGGGGAAGAACCATCAGCAGGAGTAATCCGTATTTTA +ATTGGATCCACATTCATAGCAAACACCAAAAATCCATATTGGGACCACAATCCCAACAAAGACCACTGGACAGA +AGCCAACAAGGTAGGAGTGGGAGCATTCGGGCCTGGGTTCACTCCCCCACACGGAGGCCTTTTGGGGTGGAGCC +CTCAGGCTCAAGGCATGCTGACAACATTACCAGCAAATCCGCCTCCTGCCTCCACCAATCGACAGTCAGGAAGG +CAGCCTACCCCAATCACTCCACCTTTGAGAGACACTCATCCTCAGGCCATGCAGTGGAATTCCACAACATTCCA +CCAAGCTCTGCAGGATCCCAGAGTAAATCCTGCTGGTGGCTCCAGTTCCGGAACAGTGAACCCTGTTCCGACTA +CTGCCTCACTCATCTCGTCAATCTTCTCGAGGATTGGGGACCCTGCACCGAACATGGAAAGCATCACATCAGGA +TTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAAAATCCTCACAATACCGCAGAGTCT +AGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCTCCCGTGTGTCTTGGCCAAAATTCTCAGTCCCAAA +CCTCCAGTCACTCACCAACCTCTTGTCCTCCAATTTGTCCTGCCTATCGCTGGATGTGTCTGCGGCGGTTTATC +ATATTCCTCTTCATCGTGCTGCTATGCCTCATCATCCTGTTGGGTTCGTCTGCACCATCAAAAGAATGTTGCCC +CGGGTTGTGATTAAAAATTCCAAGGAGCAAGAAAGCCACCCACTACGGGAACCAGGGCCGGAAGCTGAACAAGT +CATTTTTCAAAGGAAAATGAAAGATTTTCTTTCTTATTTGTGGGGGAAAAGCAAAAAAAGGAAAAAGGAAATTG +GGGTTACAAACCCCACCCCCAAGGGATTTGGGAAATACCATATTTTAAAGGGGAAAGGGCCGCATAACCCATTA +AAAATTGCATATTTTAAATTTTTTTTTTTTGAGAAAGAGGGGGGAC +>Ref X75657.1 Human hepatitis virus genotype E Bas preS1 preS2 S C X antigens core antigen X protein and polymerase:1-718 forward +TTCCACAACATTCCACCAAGCTCTGCAGGATCCCAGAGTAAGAGGCCTGTATTTTCCTGCTGGTGGCTCCAGTT +CCGGAACAGTGAACCCTGTTCCGACTACTGCCTCACTCATCTCGTCAATCTTCTCGAGGATTGGGGACCCTGCA +CCGAACATGGAAAGCATCACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGAC +AAAAATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCTCCCGTGT +GTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAGTCACTCACCAACCTCTTGTCCTCCAATTTGTCCTGGCTAT +CGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCT +TCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCATCAACCACCAGTACGGGACCCTGCC +GAACCTGCACGACTCTTGCTCAAGGAACCTCTATGTTTCCCTCATGTTGCTGTTCAAAACCTTCGGACGGAAAT +TGCACTTGTATTCCCATCCCATCATCATGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTC +CTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGCCGGGCTTTCCCCC + +Alignment score: -906 +#------------------------------------------------------------------------- + +Alt 1 TTTTTTTTTGAGCGGGTCGAACCGTCACGAAAAGAAAAGGGGAAGAACCATCAGCAGGAG + +Ref 1 ------------------------------------------------------------ + +Alt 61 TAATCCGTATTTTAATTGGATCCACATTCATAGCAAACACCAAAAATCCATATTGGGACC + +Ref 1 ------------------------------------------------------------ + +Alt 121 ACAATCCCAACAAAGACCACTGGACAGAAGCCAACAAGGTAGGAGTGGGAGCATTCGGGC + +Ref 1 ------------------------------------------------------------ + +Alt 181 CTGGGTTCACTCCCCCACACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAAGGCATGC + +Ref 1 ------------------------------------------------------------ + +Alt 241 TGACAACATTACCAGCAAATCCGCCTCCTGCCTCCACCAATCGACAGTCAGGAAGGCAGC + +Ref 1 ------------------------------------------------------------ + +Alt 301 CTACCCCAATCACTCCACCTTTGAGAGACACTCATCCTCAGGCCATGCAGTGGAATTCCA + ||||| +Ref 1 -------------------------------------------------------TTCCA + +Alt 361 CAACATTCCACCAAGCTCTGCAGGATCCCAGAGTAAA------------TCCTGCTGGTG + |||||||||||||||||||||||||||||||||||| ||||||||||| +Ref 6 CAACATTCCACCAAGCTCTGCAGGATCCCAGAGTAAGAGGCCTGTATTTTCCTGCTGGTG + +Alt 409 GCTCCAGTTCCGGAACAGTGAACCCTGTTCCGACTACTGCCTCACTCATCTCGTCAATCT + |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| +Ref 66 GCTCCAGTTCCGGAACAGTGAACCCTGTTCCGACTACTGCCTCACTCATCTCGTCAATCT + +Alt 469 TCTCGAGGATTGGGGACCCTGCACCGAACATGGAAAGCATCACATCAGGATTCCTAGGAC + |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| +Ref 126 TCTCGAGGATTGGGGACCCTGCACCGAACATGGAAAGCATCACATCAGGATTCCTAGGAC + +Alt 529 CCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAAAATCCTCACAATACCGCAGA + |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| +Ref 186 CCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAAAATCCTCACAATACCGCAGA + +Alt 589 GTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCTCCCGTGTGTCTTGGCC + |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| +Ref 246 GTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCTCCCGTGTGTCTTGGCC + +Alt 649 AAAATTCTCAGTCCCAAACCTCCAGTCACTCACCAACCTCTTGTCCTCCAATTTGTCCTG + ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| +Ref 306 AAAATTCGCAGTCCCCAACCTCCAGTCACTCACCAACCTCTTGTCCTCCAATTTGTCCTG + +Alt 709 CCTATCGCTGGATGTGTCTGCGGCGGTTTATCATATTCCTCTTCATCGTGCTGCTATGCC + |||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| +Ref 366 GCTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCC + +Alt 769 TCATCATCCTGTTGGGTTCGTCTGCACCATCAAAAGAATGTTGCCCCGGGTTGTGATTAA + ||||| || |||| ||||| |||| || |||| | | ||||||||| | |||| | +Ref 426 TCATCTTCTTGTT-GGTTCTTCTGGACTATCA-AGGTATGTTGCCC--GTTTGTCCT--C + +Alt 829 AAATTCCAAGGAGCAAGAAAGCCACCCACTACGGGAACCAGGGCCGGAAGCTGAACAAGT + ||||||| ||| || || ||| ||| ||||||| || |||| || ||| || | | +Ref 480 TAATTCCA-GGATCATCAA--CCA-CCAGTACGGGACCC--TGCCG-AACCTGCACGACT + +Alt 889 CATTTTTCAAAGGAAAATGAAAGATTTTCTTTCTTATTTGTGGGGGAAAAGCAAAAAAAG + | || |||| |||| | | | |||| || | ||| | |||| | | | +Ref 533 C-TTGCTCAA-GGAACCTCTATG--TTTCCCTCAT-GTTGCTGTTCAAAACCTTCGGACG + +Alt 949 GAAAAAGGAAATTGGGGTTACAAACCCCACCCCCAAGGGATTTGGGAAATACCATATTTT + |||| | | ||| | | | |||| | || ||| ||| ||||| | ||| +Ref 588 GAAATTGCAC-TTGTA--TTCCCATCCCATCATCATGGGCTTTCGGAAAATTCCTATGGG + +Alt 1009 AAAGGGGAAAGGGCCGCATAACCCATTAAAAATTGCATATTTTA-AATTTTTTTTTTTTG + | ||| | ||| | || | || | |||| | | ||| || +Ref 645 AGTGGGCCTCAGCCCGTTTCTCC---------TGGCTCAGTTTACTAGTGCCATTTGTTC + +Alt 1068 AGAAAGAGGGGGGAC-------- + || | || | +Ref 696 AGTGGTTCGCCGGGCTTTCCCCC + +#------------------------------------------------------------------------- +#------------------------------------------------------------------------- + +