Mercurial > repos > iuc > tracy_align

diff test-data/out2.txt @ 0:80e3f678b947 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tracy commit 8a1c82789c6ef97008ecf8f55e060422fd72f217"
author iuc
date Tue, 12 Oct 2021 14:20:14 +0000
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out2.txt	Tue Oct 12 14:20:14 2021 +0000
@@ -0,0 +1,115 @@
+>Alt
+TTTTTTTTTGAGCGGGTCGAACCGTCACGAAAAGAAAAGGGGAAGAACCATCAGCAGGAGTAATCCGTATTTTA
+ATTGGATCCACATTCATAGCAAACACCAAAAATCCATATTGGGACCACAATCCCAACAAAGACCACTGGACAGA
+AGCCAACAAGGTAGGAGTGGGAGCATTCGGGCCTGGGTTCACTCCCCCACACGGAGGCCTTTTGGGGTGGAGCC
+CTCAGGCTCAAGGCATGCTGACAACATTACCAGCAAATCCGCCTCCTGCCTCCACCAATCGACAGTCAGGAAGG
+CAGCCTACCCCAATCACTCCACCTTTGAGAGACACTCATCCTCAGGCCATGCAGTGGAATTCCACAACATTCCA
+CCAAGCTCTGCAGGATCCCAGAGTAAATCCTGCTGGTGGCTCCAGTTCCGGAACAGTGAACCCTGTTCCGACTA
+CTGCCTCACTCATCTCGTCAATCTTCTCGAGGATTGGGGACCCTGCACCGAACATGGAAAGCATCACATCAGGA
+TTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAAAATCCTCACAATACCGCAGAGTCT
+AGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCTCCCGTGTGTCTTGGCCAAAATTCTCAGTCCCAAA
+CCTCCAGTCACTCACCAACCTCTTGTCCTCCAATTTGTCCTGCCTATCGCTGGATGTGTCTGCGGCGGTTTATC
+ATATTCCTCTTCATCGTGCTGCTATGCCTCATCATCCTGTTGGGTTCGTCTGCACCATCAAAAGAATGTTGCCC
+CGGGTTGTGATTAAAAATTCCAAGGAGCAAGAAAGCCACCCACTACGGGAACCAGGGCCGGAAGCTGAACAAGT
+CATTTTTCAAAGGAAAATGAAAGATTTTCTTTCTTATTTGTGGGGGAAAAGCAAAAAAAGGAAAAAGGAAATTG
+GGGTTACAAACCCCACCCCCAAGGGATTTGGGAAATACCATATTTTAAAGGGGAAAGGGCCGCATAACCCATTA
+AAAATTGCATATTTTAAATTTTTTTTTTTTGAGAAAGAGGGGGGAC
+>Ref X75657.1:2091-3110 forward
+AACTAATGACTCTAGCTACCTGGGTGGGTGTAAATTTGGAAGATCCAGCATCCAGGGACCTAGTAGTCAGTTAT
+GTCAATACTAATATGGGCCTAAAGTTCAGGCAATTATTGTGGTTTCACATTTCTTGTCTCACTTTTGGAAGAGA
+AACCGTCATAGAGTATTTGGTGTCTTTTGGAGTGTGGATTCGCACTCCTCCAGCTTATAGACCACCAAATGCCC
+CTATCTTATCAACACTTCCGGAGAATACTGTTGTTAGACGAAGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCG
+CCTCGCAGACGAAGATCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCCAGCTTCCCAATGTTAGTATTCCTT
+GGACTCATAAGGTGGGAAATTTTACGGGGCTTTACTCTTCTACTATACCTGTCTTTAATCCTAACTGGAAAACT
+CCATCTTTTCCTGATATTCATTTGCACCAGGACATTATTAACAAATGTGAACAATTTGTAGGTCCTCTAACTGT
+AAATGAAAAACGAAGATTAAACTTAGTCATGCCTGCTAGATTTTTTCCCATCTCTACGAAATATTTGCCCCTAG
+AGAAAGGTATAAAACCTTATTATCCAGATAATGTAGTTAATCATTACTTCCAAACCAGACACTATTTACATACC
+CTATGGAAGGCGGGCATCTTATATAAAAGAGAAACTACACGTAGCGCCTCATTTTGTGGGTCACCTTATTCTTG
+GGAACAAGAGCTACATCATGGGGCTTTCTTGGACGGTCCCTCTCGAATGGGGGAAGAATATTTCCACCACCAAT
+CCTCTGGGATTTTTTCCCGACCACCAGTTGGATCCAGCATTCAGAGCAAACACCAGAAATCCAGATTGGGACCA
+CAATCCCAACAAAGACCACTGGACAGAAGCCAACAAGGTAGGAGTGGGAGCATTCGGGCCTGGGTTCACTCCCC
+CACACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAAGGCATGCTAAAAACATTGCC
+
+Alignment score: -2113
+#-------------------------------------------------------------------------
+
+Alt         1 --------TTTTTTTTTGAGCGGGTCGAACCGTCACGAAAAGAAAAGGGGAAGAACCATC
+                        | |   |    |||| |    ||    |   | | ||    || | |   
+Ref      2091 AACTAATGACTCTAGCTACCTGGGTGG----GTGTAAATTTGGA-AGATCCAGCATCCAG
+
+Alt        53 AGCAGGAGTAATCCGTATTTTAATTGGATCCACAT-TCATAGCAAACACCAAAAATCCAT
+               |    |||| || ||    ||  |  || |  || |      |||   ||   |   ||
+Ref      2146 GGACCTAGTAGTCAGT----TATGTCAATACTAATATGGGCCTAAAGTTCAGGCAATTAT
+
+Alt       112 ATTGGGACCACAATCCCAACAAAGACCACTGGAC-AGAAGCCAACAAGGTAGGAGTGGGA
+                |||   ||| ||  |       ||   ||||  |||| ||  ||  | || | | || 
+Ref      2202 TGTGGTTTCAC-ATTTCTTGTCTCACTTTTGGAAGAGAAACCGTCATAG-AGTATTTGGT
+
+Alt       171 G-CATTCGG-GCCTGGGTTC--ACTCCCCCACACGGAGGCCTTTTGGGGTGGAGCCCTCA
+              | | || || |  ||| |||  ||||| |||       || | |        || || | 
+Ref      2260 GTCTTTTGGAGTGTGGATTCGCACTCCTCCA-------GCTTAT--------AGACCAC-
+
+Alt       227 GGCTCAAGGCATGCTGACAACATTACCAGCAAATCCGCCTCCTGCCTCCACCAATCGACA
+                  |||   ||||    | | ||| || ||  ||||     | |       |  ||| |
+Ref      2304 ----CAA---ATGCCCCTATC-TTATCAACACTTCCGGAGAATACTGTTGTTAGACGA-A
+
+Alt       287 GTCAGGAAGGCAGCCTACCCCAATCACTCCACCTTTGAG-AGACACTCATCCTCAGGCCA
+              |  ||| |||   ||||    ||  |||||  |     | ||||    ||| |||  |  
+Ref      2355 G--AGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGATC-TCAATCGC
+
+Alt       346 TGCAGTGGAATTCCACAACATTCCACCAAGCTCTGCAGGATCCCAGAGTAAATCCTGCTG
+               || || |     || || ||  ||      ||| |||  |||||  || | |  | || 
+Ref      2412 CGC-GTCG-----CAGAAGATCTCAA-----TCTCCAGCTTCCCAATGTTAGTATTCCTT
+
+Alt       406 GTGGCTCCAGTTCCGGAACAGTGAACCCTG-TTCCGACTACTGCCTCACTCATCTCGTCA
+              | | |||       || | | |  ||   | ||    || || |   ||   |||  | |
+Ref      2461 G-GACTCATAAGGTGGGAAATTTTACGGGGCTTTACTCTTCTACTATACCTGTCT--TTA
+
+Alt       465 ATCTTCTCGAGGATTGGGGACCCTGCACCGAACATGGAAAGCATCACATCAGGATTCCTA
+              ||| |  |  | |      | | |   | ||   |     ||| ||   ||  |||   |
+Ref      2518 ATCCTAACTGGAAAACTCCATCTTTTCCTGATATTCATTTGCACCAGGACATTATT---A
+
+Alt       525 GGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAAAATCCTCACAATACCG
+                |    ||  |   ||  |   ||   | |   |||  |  |||| |   |  ||    
+Ref      2575 ACAAATGTGAACAATTTGTA---GGTCCTCTAACTGTAAATGAAAAACG--AAGATTAAA
+
+Alt       585 CAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCT--CCCGTGTGTC
+              |  ||||   |  | || | || || | ||   | |||| |      |  ||| |     
+Ref      2630 CTTAGTC---ATGCCTGCTAGATTTTT-TCCCATCTCTACGAAATATTTGCCCCTAGAGA
+
+Alt       643 TTGGCCAAAATTCTCAGT--CCCAAACCTCCAGTCACTCACCAACCTCTTGTCCTCCAAT
+                ||   |||  || | |  ||  |   |  ||| | |||  |    |    |   || |
+Ref      2686 AAGGTATAAAACCTTATTATCCAGATAATGTAGTTAATCATTACTTCCAAACCAGACACT
+
+Alt       701 TTGTCCTGCCTATCGCTGGATGTGTCTGCGGCGGTTTATCATATTCCT-CTTCATCGTGC
+               | | |   |   |  |||| | |   ||  |  | ||| | |      || ||    ||
+Ref      2746 ATTTACATAC--CCTATGGAAG-GCGGGCATCT-TATATAAAAGAGAAACTACACGTAGC
+
+Alt       760 TGCT------ATGCCTCATCATCCTGTTGGGTTCGTCTGCACCATCAAAAGAATGTTGCC
+                ||       ||  ||| | |  | |||||  |    ||  |||||   |   | |  |
+Ref      2802 GCCTCATTTTGTGGGTCACCTTATTCTTGGGAACAAGAGCTACATCATGGG---GCTTTC
+
+Alt       814 CCGGGTTGTGATTAAAAATTCCAAGGAGCAAGAAAGCCACCCACTACGGGAACCAGGGCC
+                ||   ||   |      || || | |  |  ||     |||| ||   || |      
+Ref      2859 TTGGACGGTCCCTC-----TCGAATGGGGGAAGAATATTTCCACCACC--AATCCTCTGG
+
+Alt       874 GGAAGCTGAACAAGTCATTTTTCAAAGGAAAATGAAAGATTTTCTTTCTTATTTGTGGGG
+              |               ||||||    |   |     ||  ||   | |    ||  |   
+Ref      2912 G---------------ATTTTTTCCCG---ACCACCAG--TTGGATCCAGCATTCAG---
+
+Alt       934 GAAAAGCAAAAAAAGGAAAAAGGAAATTGGGGTTACAAACCCCACCCCCAAGGGATTTGG
+                  |||||| |   ||||    | ||||||   |||| ||| ||    |||     |||
+Ref      2949 ----AGCAAACACCAGAAA-TCCAGATTGGGACCACAATCCCAACA---AAGACCACTGG
+
+Alt       994 G--AAATACCATATTTTAAAGGGGAAAGGGCCGCATAACCCATTAAAAATTGCATATTTT
+                  ||  | | |   ||   | |  ||              || |      || |    
+Ref      3001 ACAGAAGCCAACAAGGTAGGAGTGGGAGCATTCGGGCCTGGGTTCACTCCCCCACACGGA
+
+Alt      1052 AAATTTTTTTTTTTTGAGAAAGAGGGGGGAC-------------------
+                  ||||    |         |||    |                    
+Ref      3061 GGCCTTTTGGGGTGGAGCCCTCAGGCTCAAGGCATGCTAAAAACATTGCC
+
+#-------------------------------------------------------------------------
+#-------------------------------------------------------------------------
+
+