diff test-data/out1.align2.fasta @ 0:99d31ec6629b draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tracy commit 8a1c82789c6ef97008ecf8f55e060422fd72f217"
author iuc
date Tue, 12 Oct 2021 14:20:41 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out1.align2.fasta	Tue Oct 12 14:20:41 2021 +0000
@@ -0,0 +1,106 @@
+>Alt2 (Estimated allelic Fraction: 0.28)
+TANTTNTTNGGNNGTCACTCGCCNNGGGGATCANAGTTATGTGGGGACATTANTCATTTTGTTTGGGATTTCCC
+TCTCTTCTTAGAACACTGGACATAAGCCAACAAGGTAGGAGTGGGAGCATTCGGGCCTGGGTTCACTCCCCCAC
+ACGGAGGCCTTTTGGGGTGGAGCACTCAGGCTCAAGGCATGCTGACAACATTACCAGCAAATCCGCCTCCTGCC
+TCCACCAATCGACAGTCAGGAAGGCAGCCTACCCAAATTACACCACCTTTGAGAGACACTCATCCTCAGGCCAT
+GCAGTGGAATTCCACAACATGCCACCAACCTCTGCAGGATCCCAAAGTAAGTCCTGCTGGTGGCTCCAGTTCCG
+GAACAGTGAACCCTGTTCCGACTACAGCCTCACTCATCTCGTCAACCTTCTCGAGGATTGGGGACCCTGCACCG
+AACATGGACAGCATCACATCAGGATTCCGATGACCCCCGCTCATGTTACAAGCGGGGTTTTTCTTGTTGACAAA
+AATAAACAGGATACCGCGTAGACAACAGGCGTGGTGGACTTCTCTCTCTTTTGGAAGGGGAGGACCTTTGTGTG
+ATGGTGGGAAATCTTAGTCCCTCGCCTCCAATCACTCTCCACCCTCTTGTGGGCCTAATTGAGGTGAGTCCCGC
+TGAAAGAAGTGGCAGCGGGGTATCACATACCTCTTCATCTTGCGGGAGAGCCGCCACGTCCTGTGTGGGTGAGC
+TCCCCCAGAACAAAAGGGTGTTGCGGGGGGGGGNGGNNACAAACCGCGGGGGGAAGGAGGGAACCCACTAAAAG
+AACNGGTGCGGTTTCAAAAAAGGGACTGTTTAGTTGAGAANGGNCNGNCATTTTTCATANTTTCTGTGGGTGAG
+TAAAAAACACGGGGGACGCAGATGGGAGGNTNNTCCAAACACCAAAAAANGAGGGAGGGGNAATTTATTCTNNA
+AGGNNNGCGCAAGNCNNTTC
+>Ref X75657.1 Human hepatitis virus genotype E Bas preS1 preS2 S C X antigens core antigen X protein and polymerase:1-714 forward
+TTCCACAACATTCCACCAAGCTCTGCAGGATCCCAGAGTAAGAGGCCTGTATTTTCCTGCTGGTGGCTCCAGTT
+CCGGAACAGTGAACCCTGTTCCGACTACTGCCTCACTCATCTCGTCAATCTTCTCGAGGATTGGGGACCCTGCA
+CCGAACATGGAAAGCATCACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGAC
+AAAAATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCTCCCGTGT
+GTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAGTCACTCACCAACCTCTTGTCCTCCAATTTGTCCTGGCTAT
+CGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCT
+TCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCATCAACCACCAGTACGGGACCCTGCC
+GAACCTGCACGACTCTTGCTCAAGGAACCTCTATGTTTCCCTCATGTTGCTGTTCAAAACCTTCGGACGGAAAT
+TGCACTTGTATTCCCATCCCATCATCATGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTC
+CTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGCCGGGCTTTC
+
+Alignment score: -1120
+#-------------------------------------------------------------------------
+
+Alt         1 TANTTNTTNGGNNGTCACTCGCCNNGGGGATCANAGTTATGTGGGGACATTANTCATTTT
+              |                                                           
+Ref         1 T-----------------------------------------------------------
+
+Alt        61 GTTTGGGATTTCCCTCTCTTCTTAGAACACTGGACATAAGCCAACAAGGTAGGAGTGGGA
+                        |||                                               
+Ref         2 ----------TCC-----------------------------------------------
+
+Alt       121 GCATTCGGGCCTGGGTTCACTCCCCCACACGGAGGCCTTTTGGGGTGGAGCACTCAGGCT
+                                                                          
+Ref         5 ------------------------------------------------------------
+
+Alt       181 CAAGGCATGCTGACAACATTACCAGCAAATCCGCCTCCTGCCTCCACCAATCGACAGTCA
+                          ||||||||                       ||||||| |  | | ||
+Ref         5 ------------ACAACATT-----------------------CCACCAAGCT-CTG-CA
+
+Alt       241 GGAAGGCAGCCTACCCAAATTACACCACCTTTGAGAGACACTCATCCTCAGGCCATGCAG
+              |||          |||| | ||           ||||              |||      
+Ref        28 GGAT---------CCCAGAGTA-----------AGAG--------------GCC------
+
+Alt       301 TGGAATTCCACAACATGCCACCAACCTCTGCAGGATCCCAAAGTAAGTCCTGCTGGTGGC
+              || | ||                                        |||||||||||||
+Ref        48 TGTATTT----------------------------------------TCCTGCTGGTGGC
+
+Alt       361 TCCAGTTCCGGAACAGTGAACCCTGTTCCGACTACAGCCTCACTCATCTCGTCAACCTTC
+              ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
+Ref        68 TCCAGTTCCGGAACAGTGAACCCTGTTCCGACTACTGCCTCACTCATCTCGTCAATCTTC
+
+Alt       421 TCGAGGATTGGGGACCCTGCACCGAACATGGACAGCATCACATCAGGATTCCGATGACCC
+              |||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||
+Ref       128 TCGAGGATTGGGGACCCTGCACCGAACATGGAAAGCATCACATCAGGATTCCTAGGACCC
+
+Alt       481 CCGCTCATGTTACAAGCGGGGTTTTTCTTGTTGACAAAAATAAACAGGATACCGCGTAGA
+              | |||| ||||||| ||||||||||||||||||||||||||   ||  |||||||  || 
+Ref       188 CTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAAAATCCTCACAATACCGCAGAGT
+
+Alt       541 CAACAGGCGTGGTGGACTTCTCTCTCTTTTGGAAGGGGAGGACCTTTGTGTGATGGTGGG
+              | | |  |||||||||||||||||  ||||  | ||||||  ||  |||||  |||    
+Ref       248 CTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCTCCCGTGTGTCTTGGCCAA
+
+Alt       601 AAATCTTAGTCCCTCGCCTCCAATCACTCTCCACCCTCTTGTGGGCCTAATTGAGGTGAG
+              || ||  ||||||   |||||| |||||| ||| ||||||||   || | |||   ||  
+Ref       308 AATTCGCAGTCCCCAACCTCCAGTCACTCACCAACCTCTTGTCCTCCAATTTGTCCTGGC
+
+Alt       661 TCCCGCTGAAAGAAGTGGCAGCGGGGT---ATCACATACCTCTTCATCTTGCGGGAGAGC
+              |  |||||   || ||| | |||| ||   ||||  | |||||||||| ||| |    ||
+Ref       368 TATCGCTG---GATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGC
+
+Alt       718 CGCCACGTCCTGTGTGGGTGAGCTCCCCCAGAACAAAAGGGTGTTGCGGGGGGGGGNGGN
+              | |  | || ||| ||| |   || |   |  |  || |  ||||||  |   |      
+Ref       425 CTCATCTTCTTGT-TGGTT---CTTCTGGACTATCAAGGTATGTTGCCCGTTTGT-----
+
+Alt       778 NACAAACCGCGGGGGGAAGGAGGGAACCCACTAAAAGAACNGGTGCGGTTTCAAAAAAGG
+                    || |       ||||    | | || |  || || ||  |   | |  ||   |
+Ref       476 ------CCTCTAATTCCAGGATC--ATCAACCACCAGTACGGGACCC--TGCCGAACCTG
+
+Alt       838 GACTGTTTAGTTGAGAANGGNCNGNCATTTTTCATANTTTCTGTGGGTGAGTAAAAAACA
+               || |  |  |    || |  |    || ||||     |  ||| | ||  |  ||||| 
+Ref       526 CAC-GACTCTTGCTCAAGGAACCTCTATGTTTCCC---TCATGTTGCTG--TTCAAAAC-
+
+Alt       898 CGGGGGACGCAGATGGGAGGN-TNNTCCAAACACCAAAAAANGAGGGAGGGGNAATTTAT
+              |   ||||| | || | |    |  ||| | | |   |  | | |     || || ||  
+Ref       579 CTTCGGACGGAAATTGCACTTGTATTCCCATCCCATCATCATGGGCTTTCGGAAAATTCC
+
+Alt       957 TCTNNAAGGNNNGCGCAAGNCNNTTC----------------------------------
+              | |   ||     | ||   |  |||                                  
+Ref       639 TATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAGT
+
+Alt       983 ----------------
+                              
+Ref       699 GGTTCGCCGGGCTTTC
+
+#-------------------------------------------------------------------------
+#-------------------------------------------------------------------------
+
+