view test-data/out1.align3.fasta @ 0:6ec40b104f9d draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tracy commit 8a1c82789c6ef97008ecf8f55e060422fd72f217"
author iuc
date Tue, 12 Oct 2021 14:21:06 +0000
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>Alt1 (Estimated allelic Fraction: 0.52)
TCNGCNGGNGTNNTCCGTATTTTNNTTGGATCCNCATTCATAGCAAACACCANAAATCCATATTGGGACCACAA
TCCCAACAAAGACCACTGGACAGAAGCCAACAAGGTAGGAGTGGGAGCATTCGGGCCTGGGTTCACTCCCCCAC
ACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAAGGCATGCTGACAACATTACCAGCAAATCCGCCTCCTGCC
TCCACCAATCGACAGTCAGGAAGGCAGCCTACCCCAATCACTCCACCTTTGAGAGACACTCATCCTCAGGCCAT
GCAGTGGAATTCCACAACATTCCACCAAGCTCTGCAGGATCCCAGAGTAAATCCTGCTGGTGGCTCCAGTTCCG
GAACAGTGAACCCTGTTCCGACTACTGCCTCACTCATCTCGTCAATCTTCTCGAGGATTGGGGACCCTGCACCG
AACATGGAAAGCATCACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAA
AATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCTCCCGTGTGTC
TTGGCCAAAATTCGCAGTCCCAAACCTCCAGTCACTCACCAACCTCTTGTCCTCCAATTTGTCCTGCCTATCGC
TGGATGTGTCTGCGGCGGTTTATCATCTTCCTCTTCATCGTGCTGCTATGCCTCATCATCCTGTTGGGTTCGTC
TGCACTATCAAAGGTATGTTGCCCCGGTTTGTCNTTNNTAATTCCAAGGATCATGAAAGCCACCCACTACGGGA
ACCNTTGCCGCAAGCTGCACGACTCATTTCTCAAAGGAAANTCNANGNTTTTCCCTCATNGTTGCTGTTCAAAA
GCTTCGGACGGAAAATGCACATTGTAGTTNCNNATCCCATCATCATGGGNTTTGGGAAATNCCATATGGTANNG
GGCNNNAGCCCGCNTNNCCT
>Alt2 (Estimated allelic Fraction: 0.28)
TANTTNTTNGGNNGTCACTCGCCNNGGGGATCANAGTTATGTGGGGACATTANTCATTTTGTTTGGGATTTCCC
TCTCTTCTTAGAACACTGGACATAAGCCAACAAGGTAGGAGTGGGAGCATTCGGGCCTGGGTTCACTCCCCCAC
ACGGAGGCCTTTTGGGGTGGAGCACTCAGGCTCAAGGCATGCTGACAACATTACCAGCAAATCCGCCTCCTGCC
TCCACCAATCGACAGTCAGGAAGGCAGCCTACCCAAATTACACCACCTTTGAGAGACACTCATCCTCAGGCCAT
GCAGTGGAATTCCACAACATGCCACCAACCTCTGCAGGATCCCAAAGTAAGTCCTGCTGGTGGCTCCAGTTCCG
GAACAGTGAACCCTGTTCCGACTACAGCCTCACTCATCTCGTCAACCTTCTCGAGGATTGGGGACCCTGCACCG
AACATGGACAGCATCACATCAGGATTCCGATGACCCCCGCTCATGTTACAAGCGGGGTTTTTCTTGTTGACAAA
AATAAACAGGATACCGCGTAGACAACAGGCGTGGTGGACTTCTCTCTCTTTTGGAAGGGGAGGACCTTTGTGTG
ATGGTGGGAAATCTTAGTCCCTCGCCTCCAATCACTCTCCACCCTCTTGTGGGCCTAATTGAGGTGAGTCCCGC
TGAAAGAAGTGGCAGCGGGGTATCACATACCTCTTCATCTTGCGGGAGAGCCGCCACGTCCTGTGTGGGTGAGC
TCCCCCAGAACAAAAGGGTGTTGCGGGGGGGGGNGGNNACAAACCGCGGGGGGAAGGAGGGAACCCACTAAAAG
AACNGGTGCGGTTTCAAAAAAGGGACTGTTTAGTTGAGAANGGNCNGNCATTTTTCATANTTTCTGTGGGTGAG
TAAAAAACACGGGGGACGCAGATGGGAGGNTNNTCCAAACACCAAAAAANGAGGGAGGGGNAATTTATTCTNNA
AGGNNNGCGCAAGNCNNTTC

Alignment score: 730
#-------------------------------------------------------------------------

Alt1        1 TCNGCNGGNGTNNTCCGTATTTTNNTTGGATCCNCATTCATAGCAAACACCANAAATCCA
              | |  |  || ||  |       ||  ||||| |  ||    |   |||  ||  ||   
Alt2        1 TANTTNTTNGGNNGTCACTCGCCNNGGGGATCANAGTTATGTGGGGACATTANTCATTTT

Alt1       61 TATTGGGACCACAATCCCAACAAAGACCACTGGACAGAAGCCAACAAGGTAGGAGTGGGA
                ||||||   |  || |  |  ||| ||||||||| |||||||||||||||||||||||
Alt2       61 GTTTGGGATTTCCCTCTCTTCTTAGAACACTGGACATAAGCCAACAAGGTAGGAGTGGGA

Alt1      121 GCATTCGGGCCTGGGTTCACTCCCCCACACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCT
              ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Alt2      121 GCATTCGGGCCTGGGTTCACTCCCCCACACGGAGGCCTTTTGGGGTGGAGCACTCAGGCT

Alt1      181 CAAGGCATGCTGACAACATTACCAGCAAATCCGCCTCCTGCCTCCACCAATCGACAGTCA
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Alt2      181 CAAGGCATGCTGACAACATTACCAGCAAATCCGCCTCCTGCCTCCACCAATCGACAGTCA

Alt1      241 GGAAGGCAGCCTACCCCAATCACTCCACCTTTGAGAGACACTCATCCTCAGGCCATGCAG
              |||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||
Alt2      241 GGAAGGCAGCCTACCCAAATTACACCACCTTTGAGAGACACTCATCCTCAGGCCATGCAG

Alt1      301 TGGAATTCCACAACATTCCACCAAGCTCTGCAGGATCCCAGAGTAAATCCTGCTGGTGGC
              |||||||||||||||| ||||||| ||||||||||||||| ||||| |||||||||||||
Alt2      301 TGGAATTCCACAACATGCCACCAACCTCTGCAGGATCCCAAAGTAAGTCCTGCTGGTGGC

Alt1      361 TCCAGTTCCGGAACAGTGAACCCTGTTCCGACTACTGCCTCACTCATCTCGTCAATCTTC
              ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Alt2      361 TCCAGTTCCGGAACAGTGAACCCTGTTCCGACTACAGCCTCACTCATCTCGTCAACCTTC

Alt1      421 TCGAGGATTGGGGACCCTGCACCGAACATGGAAAGCATCACATCAGGATTCCTAGGACCC
              |||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||
Alt2      421 TCGAGGATTGGGGACCCTGCACCGAACATGGACAGCATCACATCAGGATTCCGATGACCC

Alt1      481 CTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAAAATCCTCACAATACCGCAGAGT
              | |||| ||||||| ||||||||||||||||||||||||||   ||  |||||||  || 
Alt2      481 CCGCTCATGTTACAAGCGGGGTTTTTCTTGTTGACAAAAATAAACAGGATACCGCGTAGA

Alt1      541 CTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCTCCCGTGTGTCTTGGCCAA
              | | |  |||||||||||||||||  ||||  | ||||||  ||  |||||  |||    
Alt2      541 CAACAGGCGTGGTGGACTTCTCTCTCTTTTGGAAGGGGAGGACCTTTGTGTGATGGTGGG

Alt1      601 AATTCGCAGTCCCAAACCTCCAGTCACTCACCAACCTCTTGTCCTCCAATTTGTCCTGCC
              || ||  ||||||   |||||| |||||| ||| ||||||||   || | |||   ||  
Alt2      601 AAATCTTAGTCCCTCGCCTCCAATCACTCTCCACCCTCTTGTGGGCCTAATTGAGGTGAG

Alt1      661 TATCGCTGGATGTGTCTGCGGCGGTTTATCATCTTCCTCTTCATCGTGCTGCTATGCCTC
              |  ||||| | |     || ||||  |||||  | |||||||||| ||| |    ||| |
Alt2      661 TCCCGCTGAAAGAAGTGGCAGCGGGGTATCACATACCTCTTCATCTTGCGGGAGAGCCGC

Alt1      721 ATCATCCTGT-TGGGTTCG-TCTGCACTATCAAAGGTATGTTGCCCCGGTTTGTCNTTNN
                | |||||| |||||  | ||  |   | |||| |  ||||||   ||   |  |  ||
Alt2      721 CACGTCCTGTGTGGGTGAGCTCCCCCAGAACAAAAGGGTGTTGCGGGGGGGGG--NGGNN

Alt1      779 TAATTCCAAGGATC-ATGAAAGCCACCCACTACGGGAACCNTTGCCGC-----AAGCTGC
                |  ||  ||    | | | |  ||||||||   ||||   ||| |      ||   | 
Alt2      779 ACAAACCGCGGGGGGAAGGAGGGAACCCACTAAAAGAACNGGTGCGGTTTCAAAAAAGGG

Alt1      833 ACGACTCATTTCTCAAAGGAAANTCNANGNTTTTCCCTCATNGTTGCTGT-------TCA
              ||   | | ||   || ||     || |  ||||   ||||  || ||||       | |
Alt2      839 ACTGTTTAGTTGAGAANGGN----CNGNCATTTT---TCATANTTTCTGTGGGTGAGTAA

Alt1      886 AAAGCTTCGGACGGAAAATGCACATTGTAGTTNCNNATCCCATCATCAT-----GGGNTT
              ||| |     ||||   | ||| || | ||  | || ||| | || ||      | |   
Alt2      892 AAAAC-----ACGGGGGACGCAGATGGGAGG-NTNN-TCCAAACACCAAAAAANGAGGGA

Alt1      941 TGGGAAATNCCATATGGTANNGGGCNNNAGCCCGCNTNNCCT
               ||| |||    |||  | |  || ||  ||  | | ||   
Alt2      945 GGGGNAATT---TATTCTNNAAGGNNNGCGCAAG-NCNNTTC

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