Mercurial > repos > iuc > transdecoder
comparison test-data/gencode/test.fa.transdecoder.cds @ 0:8aef9a17faae draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transdecoder commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
| author | iuc |
|---|---|
| date | Fri, 20 Nov 2015 06:49:25 -0500 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:8aef9a17faae |
|---|---|
| 1 >CUFF.36.1|m.5 CUFF.36.1|g.5 ORF CUFF.36.1|g.5 CUFF.36.1|m.5 type:complete len:169 (+) CUFF.36.1:895-1401(+) | |
| 2 ATGTCGCAAGACTCAGAATCGTTCATCCGGCAACTGTTTAAGGCATTTACGGATTTTAGT | |
| 3 ACTGACGTTGAGTCACTTAGAGGATTTTTAACGCCAGATTATCGACAGCTTGTCGATGGA | |
| 4 CGTGAATTGACACTTGACGATTTTATTTCTCATGCCAAAGCACTACGTACCCATCTTCAT | |
| 5 CGGCTCGACATCAACGTTCAACAAATTGTCTGTCAAGGTAACAAGGCTGCCACTGTGCAT | |
| 6 ATTGCCCATGCGATACGTTCCTCTGGCGAGTCCAGCAGAATCAAAGTCATTGCATTTTAC | |
| 7 AGTTTTAAAGACGGGCGTATTTCTTTGATCGATGAGTTGACGTACGTTCTTGAAGGTGGT | |
| 8 AATGCAGACAGAGAGCTTGGATCAGTACAATGACTTCAATTACCTTGACACTGCATTGCC | |
| 9 CACGTTATTCAACGTCCATCAGGAACCGGACAAATTATTCAGAGTCCTTTTGAACTACTT | |
| 10 CATAATTTTACAAATATTCAAGTGTAA | |
| 11 >CUFF.4.1|m.7 CUFF.4.1|g.7 ORF CUFF.4.1|g.7 CUFF.4.1|m.7 type:3prime_partial len:120 (+) CUFF.4.1:199-555(+) | |
| 12 ATGACTGCATTAATGAACCATATATATATCGATAATCCGCTTATAAGCAATTCAACTAAT | |
| 13 AACGTTACTCACGAGTTATTGATTGATCTCCATGAACTTTATAATGACGGAGAGATTTCC | |
| 14 AGGATAGTTCTACTCAGAACTTTGGTAACTCAATCTGCGGATGATGCTACATGGATAATC | |
| 15 AACTTGACAGATGATGTGCTTAATGGATTACCACTGCTGAAGAAGCGAGACCGATACACC | |
| 16 ACACAATGTCATAGTACAAATATGGCAAGCACATATGACTGTGACACTGGAGCCAATGCT | |
| 17 GTTGGAGCCCGAGGTGGAGCCACGTTAGCAGCCGACTATAGAGGTGATTGGGGGGGG | |
| 18 >CUFF.51.1|m.2 CUFF.51.1|g.2 ORF CUFF.51.1|g.2 CUFF.51.1|m.2 type:complete len:347 (+) CUFF.51.1:317-1357(+) | |
| 19 ATGGCACTTATGTTATCCAGGATTCCACGTCGTTTTTTTTTCTTATTTTTAACGGTCGGC | |
| 20 TTGATTGCTGGCGCGTTTCTATACTCGTTGATATATTTTGTGGACGTTGATTTGGTGTCG | |
| 21 AAGGTTAACCAGTTGTATGATCAGCAAATTGCACCCATGCTCTCCGATGCTATTGGCACT | |
| 22 CCATCCGTTAATCACTCGTTTGAGTTGGCGCCGTTAGACTCTCATTTGGTGGCCACAAGC | |
| 23 ACTACATTCCACGAGGCGTCATACGAGTCAGAGCCTCAGCAAAATCCTGCCAGTCAAAAT | |
| 24 ATTGTCTTATTACTAGTTAGTGATGGACACACTTCTTACAATAATGGAGCTAATACGTTT | |
| 25 GAAGAAGCTATACAGAACAGAGTTGACTATAGTACCAAACAAAACTACAACTTTGAGTAT | |
| 26 GTCAATGTTACTGGCCTCCCTATTCCCGCCGTTTGGTCCAAGATGCCCGCCGTCTTACAA | |
| 27 ACTATGAAGAAATACCCCAAAGCGGAATGGATCTGGTTGTTGGATCAGGATGCAATTATT | |
| 28 ACTAATACCCATCTTTCCCTTCAAGACTCCTTTTTGAAACCTGAGAACTTGCAAAAGACC | |
| 29 TTAATTACTAATACCATCCTCACTAAACGGCCTATAAATGCTAACGGGGATTTGCGTTAT | |
| 30 ACACCAAGTAATTATAGTTTAAAAGATATCGAAAATCTCATGGTCATAATCTCACAGGAT | |
| 31 CACAATGGATTAAACGCAGGTAGTATCTTGTTCCGTAATTCACCTGCTACTGCCTTGTTT | |
| 32 TTGGATATTTGGACAGATCCTGTTGTTGCAGAATGTGCGAAAGCCAATAATGAACAAGAC | |
| 33 ATGCTTGGATATTTGATTTCTAAGCATTCACAACTTGCTTCGCTGGTTGGCCTTATTCCT | |
| 34 CAAAGAAAAATAAATGCTTTTCACGAAGGTCCGGAAAATATGGAATGGCAAAAAGGTGAT | |
| 35 TTGGTAATTCACTTTGCTGGATGTTGGGTTGAAAACCGCTGCGATGAACTATGGCAAAAG | |
| 36 TTTTACGCCTTGATTGACTAA | |
| 37 >CUFF.51.1|m.1 CUFF.51.1|g.1 ORF CUFF.51.1|g.1 CUFF.51.1|m.1 type:complete len:372 (+) CUFF.51.1:2632-3747(+) | |
| 38 ATGTCTCGAATTTCACTTTCAAATTTTTTATCTCTTCCGCGTTACAAATTCCTGTTGTTT | |
| 39 TCTGTGGTTTTGATTATTGTGATGACAACCTTAGTGTTTAACGGACACGATTATAAGCAA | |
| 40 ACCCTTAATGACCGGCTTACTTCATTAAAAAACAACTTTGTTGAGGAAAATGATAATGCC | |
| 41 GTCTTAAAAGAAGAGCCTGGCAAATATACGTATATGAGTTTGTTTACTATGCCTTCTACT | |
| 42 GAAGAGGATTACTACTTCAACGCTACTAGGGTTTTAATTCACCGATTGAAATATCATCCT | |
| 43 ACTACCAAAAGTAAATACCCTATCCATATCCTTGCACTCCGTGGAGTAGATGAGTGGAAA | |
| 44 ATTGAACGTTTTCGAAAGGATGGTGCTTCTGTGATTGTTATAGACCCCATTGCTTCATCG | |
| 45 GATATTGTATACGATACATCCTCATTTAGTCAAGAAATATCTGCTAGATATGAACAAATG | |
| 46 TTTTCGAAGTTGCGAATTTTCGAACAAATACAATTTGACAAAATTTGCGTAATTGACAGT | |
| 47 GATATATTGATCATGAAGAACATTGATGATATATTTGATACTCCTTATATGTACCAACAA | |
| 48 ATTAATACCTTGAACTATACACGGCTACCTTCCTACACGAAGCCTGATGATGATACCGTC | |
| 49 TATCACTTCAATGAGGATTTTAAAGAATATGGTGCCAGTCGAAGCGAATTTTACCCTTAT | |
| 50 CTTCTCGCAGCCGTCTCTGATAGAGGAGAGCATCATAGTATACCTCCAGAAGATACTCCT | |
| 51 TATTTCAATGCTGGCTTAATGCTTATACGTCCAAGCGAGCTTCATTTTAACCGTATACTT | |
| 52 AAAATCGGAAGGTTTCCTTATATGTATGAGAATGCCAAAATGATGGAGCAAAGCTTGTTG | |
| 53 AATCTTGCATTTTCCTTGGACGGATGGTTTCCCTGGACTCGTCTTGATCCTTATTACAAT | |
| 54 GGCGTGTGGCCCTCAATTGACGAACGTCCTCTCTTAAAAACAGCACACGGAAAATTCTGG | |
| 55 AATATTGGTAGCTCAGAATTTGCACCAGTATATTTAGCTGACTGGTATGCTGCTTATGGC | |
| 56 GAAATGCTGTCTTTTCATAAGTATGAAACTCATTAA | |
| 57 >CUFF.57.1|m.4 CUFF.57.1|g.4 ORF CUFF.57.1|g.4 CUFF.57.1|m.4 type:complete len:1032 (+) CUFF.57.1:189-3284(+) | |
| 58 ATGTTCGATAGCTTTATGAAGAGAAATCAGCTAGCCTTAATCATGTTTCGTGCTTGCTCG | |
| 59 AAGTTGCAGTACCATGGAGTAAATACCAGCCTTTCGAGGCATTTGTTTCTTGCTAAAAGA | |
| 60 AATTTATCCATTTCTTCAGCTTGTCTAGAAGCTAAAAACTCCCAAAAGTTTCCTGCTCTT | |
| 61 GATACTTTTGAACCTCGACACATTGGACCTTCTAAAACGGATCAACAATATCAATTGGAG | |
| 62 TCACTAGGGTATAAGGATTTTGATTCTTTCCTCAAAGATGTAATTCCAGATTCTGTGCGA | |
| 63 ACACCTGAGAGCCAATTGATGGCTTTTGGGTCTGTGAATCCCAACGAAAAAAATCCTCCT | |
| 64 GTTAACTACTCCGAAAGCGAATTTACGACTCTGGCAAACAATGTGGCTAATCAAAATAAG | |
| 65 CTGATTAAGAGCTTCATTGGCATGGGATACTATAATGTAAAGCTTCCTGCTGCTATTCAG | |
| 66 CGTAATGTTCTTGAGAACCCTGAATGGTATACTCAATATACTCCATATCAGGCTGAAATT | |
| 67 TCTCAAGGGCGTCTGGAATCTATGATGAATTATCAAACCATGATTGCTGATCTCACAGGT | |
| 68 CTCAGCATTAGCAATGCTAGTTTACTGGATGAAGGAACTGCTGCTGGAGAAGCAATGGTT | |
| 69 ATGTTGATGGCCAACGACAAAAAGAAGCGCAAAACGTTTTTAGTGGACAAGAATATATAC | |
| 70 CCCAATACTCTGTCTGTTTTACGTACTCGTGCTTCTGGTTTTGGTATCAAAATTGAATTA | |
| 71 GACAATATCACTCCTGAACTCATTACGAAGTCTGCTAAGCATGTTTTTGGTATCTTTGTG | |
| 72 CAATACCCAGCGGCGGATGGCTCTATTTTTGACTATGGTCATTTAGCTGCTACAGCACGC | |
| 73 TCTTTTAATATGCACGTCGTAGCTGCCACCGATTTACTAGCTCTCACTATTTTGAAATCG | |
| 74 CCTGGGGAATGGGGTGCCGATGTTGCTGTTGGTTCCACTCAGCGCTTTGGTCTGCCCATG | |
| 75 GGCTATGGTGGCCCCCATGCCGGATTCTTTGCTTGTAGTGAAGAATTTAAACGAAAGATA | |
| 76 CCCGGTCGTCTTATTGGTCTCAGCAAAGATCGTTTAGAAAATCCCGCATACCGGTTGGCT | |
| 77 CTTCAAACAAGAGAACAACATATTCGTCGTGAAAAGGCTACAAGTAACATTTGCACGGCT | |
| 78 CAAGCTTTGTTAGCCAATATGTCTGCATTCTATGCTATTTACCATGGGCCAAATGGTCTC | |
| 79 CAAGAAATTGCAAACCGTATTTACGCTAGTACCTCCTTCTTAAAATCTGCTTTGGAATCT | |
| 80 TCAGGATATAAAATTGTTAATAAAAGTCATTTCTTTGACACATTAACTATCGAAGTTGAG | |
| 81 TCGGCTGACAAAGTTCTTGCGAAAGCACTTGATCACGGTTACAATTTAAGAAAGGTTGAT | |
| 82 GATTCACATGTTGGTCTTTCATTGGACGAGACCGTTTGCGATAAAGATATTCAAGCTTTG | |
| 83 TTTAGCATCTTTAATATAAATAAGAGTGTTGATCAGTATTATATGGAAATTGCAACGTCG | |
| 84 GAACCTAATGGAAATTCTGCTTCAACAGTCGATAATCTCAGCATTTGTTCTCTTCCTGAA | |
| 85 AACTTTAGACGAACAACCCTCTATTTACAACATCCCGTGTTTAACAGATACCATTCGGAA | |
| 86 ACTGAACTTATGCGTTATATTCATCATTTGCAGTCGAAGGATCTATCTTTAGCTCATGCC | |
| 87 ATGACCCCATTGGGTTCGTGCACAATGAAGTTGAATGCTGTCACCGAAATGATGCCAATC | |
| 88 ACAAATCCATTATTTGCCAACATTCATCCATATGTTCCAGAGGAACAAGCTAAAGGTTAT | |
| 89 CGTCATGTTATCGAAGATTTGCAGTTAATGTTAACGACCATCACCGGCTTTGATGCTGCA | |
| 90 TGCTTTCAACCAAATTCGGGAGCCGCTGGAGAATACACTGGCTTAAGTGTTATTCGAGCA | |
| 91 TATCAGCGGTCTATTGGTCAAGGTCATCGCAATATTTGCTTAATTCCTGTTTCGGCTCAC | |
| 92 GGTACTAATCCAGCTTCAGCTGCTATGGCTGGGTTTACTGTTATTCCTGTAAAATGTCTC | |
| 93 AATAACGGTTATTTGGATATGCAAGACTTAAAAGAAAAGGCCTCTAAACACGCCGACAAG | |
| 94 TTAGCTGCCTTTATGGTAACTTATCCTAGTACTTTTGGCATTTTTGAGCCTGATGTTAAG | |
| 95 GAAGCTTTGGAAGTAATTCACGAACATGGTGGTCAGGTTTACTTTGATGGTGCTAACATG | |
| 96 AATGCAATGGTTGGTTTATGCAAGGCTGGTGATATTGGTGCTGATGTTTGTCACTTAAAT | |
| 97 CTTCATAAGACATTTTGCATTCCTCACGGCGGTGGCGGTCCTGGTGTAGGTCCTATTTGT | |
| 98 GTAAAAAAGCATCTTGCTGATTTCCTACCATCTCATCCTGTAGTTTCATGCGGCGGTAAG | |
| 99 AATGGTATCACATCTGTTAGCTCTTCTCCTTTTGGCTCTGCTGGTATTTTACCTATCTCA | |
| 100 TGGGCATACATGAGAATGATGGGACTTGCCGGTTTGCGTGACGCTTCCAAAGCCGCTCTG | |
| 101 TTAAATGCCAATTATATGGCCAAGCGCCTGTCATCTCATTATAAACTTGTTTACACTAAT | |
| 102 AAGAACAACCTCTGTGCTCATGAGTTTATTCTAGATGCTCGCGAATTTAAAGCTACTGCG | |
| 103 GGTGTAGATGCAACTGATATAGCTAAACGTTTGCAAGATTACAGTTTCCATGCACCAACT | |
| 104 CTTTCCTGGCCTATTGCTAATACACTGATGATTGAGCCTACCGAGTCTGAGAGTATGTAT | |
| 105 GAGATGGACCGCTTCTGTGATGCTTTAATTTCTATTCGACAAGAAATTCGTGAAATTGAA | |
| 106 GAAGGTCTCCAGCCTAAGGACAATAACCTGCTCGTTAATGCTCCCCACCCTCAAAAGGAC | |
| 107 ATTGCATCTGAGAAATGGGATCGTCCTTATACTCGAGAGCGGGCTGTCTATCCTGTGCCT | |
| 108 CTTTTAAAGGAACGGAAATTCTGGCCTAGCGTTGCTCGATTAGATGATGCGTACGGTGAC | |
| 109 AAGAACTTATTTTGTACTTGTTCCCCAGTTGTTTAG | |
| 110 >CUFF.9.1|m.8 CUFF.9.1|g.8 ORF CUFF.9.1|g.8 CUFF.9.1|m.8 type:complete len:156 (+) CUFF.9.1:173-640(+) | |
| 111 ATGCCTATCAACCAAAAGTTTTATTCATATCTGGTAAAGCGAAATGGTGGTGAAGGTGAA | |
| 112 CCTGAATTTCGACTTCCTATGGGTTTTATTGGAATCACACTTTTTGAAATAGGAATTTTA | |
| 113 CTTTTCGGTTGGACTGCAAGATATAAGATTTTTTGGTTTGTGCCAACAATTGGATCAGCC | |
| 114 ATTATGGGTGGTGGGTACATTATGACTTCCAATCCCTTAAACATGTATGTGGTAGATTCA | |
| 115 TATGGAATTTACTCAGCCAGTGCGTCAGCGGGTGTAAAAATATTTCAACTATTATTAGGA | |
| 116 GCCATCTTTCCATTATTTGCTGAAAGTCTATTTCGTCGACTGAACTACGGATGGGGGTGT | |
| 117 ACTTTACTTGCCTTTATTTTATTAGCTTGTGGCTGTAGTCTTCCAATCTTATTCAAGTAT | |
| 118 GGAAAACAAATTAGAAATCTACGACCATTTGACCCCTCAAAATACTAG |