--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/transit_tn5.prot	Tue Oct 08 08:23:54 2019 -0400
@@ -0,0 +1,500 @@
+-	190	255	+	21	-	-	thrL	BW25113_0001	-
+bifunctional: aspartokinase I (N-terminal)%3B homoserine dehydrogenase I (C-terminal)	337	2799	+	820	-	-	thrA	BW25113_0002	-
+-	2801	3733	+	310	-	-	thrB	BW25113_0003	-
+-	3734	5020	+	428	-	-	thrC	BW25113_0004	-
+-	5234	5530	+	98	-	-	yaaX	BW25113_0005	-
+-	5683	6459	-	258	-	-	yaaA	BW25113_0006	-
+inner membrane transport protein	6529	7959	-	476	-	-	yaaJ	BW25113_0007	-
+-	8238	9191	+	317	-	-	talB	BW25113_0008	-
+putative molybdochetalase in molybdopterine biosynthesis	9306	9893	+	195	-	-	mog	BW25113_0009	-
+-	9928	10494	-	188	-	-	satP	BW25113_0010	-
+-	10643	11356	-	237	-	-	yaaW	BW25113_0011	-
+-	11382	11786	-	134	-	-	yaaI	BW25113_0013	-
+chaperone Hsp70%3B DNA biosynthesis%3B autoregulated heat shock proteins	12163	14079	+	638	-	-	dnaK	BW25113_0014	-
+chaperone with DnaK%3B heat shock protein	14168	15298	+	376	-	-	dnaJ	BW25113_0015	-
+-	15445	16557	+	370	-	-	insL1	BW25113_0016	-
+regulatory peptide whose translation enables hokC (gef) expression%3B completely contained in another CDS	16751	16960	-	69	-	-	mokC	BW25113_0018	-
+small toxic membrane polypeptide%3B completely contained in another CDS	16751	16903	-	50	-	-	hokC	BW25113_4412	-
+-	16952	17006	+	18	-	-	sokC	BW25113_4413	-
+Na+/H antiporter%2C pH dependent	17489	18655	+	388	-	-	nhaA	BW25113_0019	-
+-	18715	19620	+	301	-	-	nhaR	BW25113_0020	-
+-	19811	20314	-	167	-	-	insB1	BW25113_0021	-
+-	20233	20508	-	91	-	-	insA	BW25113_0022	-
+-	20815	21078	-	87	-	-	rpsT	BW25113_0023	-
+-	21181	21399	+	72	-	-	yaaY	BW25113_0024	-
+-	21407	22348	+	313	-	-	ribF	BW25113_0025	-
+isoleucine tRNA synthetase	22391	25207	+	938	-	-	ileS	BW25113_0026	-
+prolipoprotein signal peptidase (SPase II)	25207	25701	+	164	-	-	lspA	BW25113_0027	-
+-	25826	26275	+	149	-	-	fkpB	BW25113_0028	-
+-	26277	27227	+	316	-	-	ispH	BW25113_0029	-
+-	27293	28207	+	304	-	-	rihC	BW25113_0030	-
+-	28374	29195	+	273	-	-	dapB	BW25113_0031	-
+-	29651	30799	+	382	-	-	carA	BW25113_0032	-
+-	30817	34038	+	1073	-	-	carB	BW25113_0033	-
+transcriptional regulator of cai operon	34300	34695	+	131	-	-	caiF	BW25113_0034	-
+possible synthesis of cofactor for carnitine racemase and dehydratase	34781	35371	-	196	-	-	caiE	BW25113_0035	-
+carnitine racemase	35377	36162	-	261	-	-	caiD	BW25113_0036	-
+probable crotonobetaine/carnitine-CoA ligase	36271	37824	-	517	-	-	caiC	BW25113_0037	-
+l-carnitine dehydratase	37898	39115	-	405	-	-	caiB	BW25113_0038	-
+probable carnitine operon oxidoreductase	39244	40386	-	380	-	-	caiA	BW25113_0039	-
+probable carnitine transporter	40417	41931	-	504	-	-	caiT	BW25113_0040	-
+probable flavoprotein subunit%2C carnitine metabolism	42403	43173	+	256	-	-	fixA	BW25113_0041	-
+probable flavoprotein subunit%2C carnitine metabolism	43188	44129	+	313	-	-	fixB	BW25113_0042	-
+flavoprotein%3B electron transport	44180	45466	+	428	-	-	fixC	BW25113_0043	-
+putative ferredoxin	45463	45750	+	95	-	-	fixX	BW25113_0044	-
+putative transport protein	45807	47138	+	443	-	-	yaaU	BW25113_0045	-
+putative NAD(P)H oxidoreductase	47246	47776	+	176	-	-	kefF	BW25113_0046	-
+K+ efflux antiporter%2C glutathione-regulated	47769	49631	+	620	-	-	kefC	BW25113_0047	-
+dihydrofolate reductase type I%3B trimethoprim resistance	49823	50302	+	159	-	-	folA	BW25113_0048	-
+-	50380	51222	-	280	-	-	apaH	BW25113_0049	-
+-	51229	51606	-	125	-	-	apaG	BW25113_0050	-
+-	51609	52430	-	273	-	-	rsmA	BW25113_0051	-
+pyridoxine biosynthesis	52427	53416	-	329	-	-	pdxA	BW25113_0052	-
+survival protein	53416	54702	-	428	-	-	surA	BW25113_0053	-
+organic solvent tolerance	54755	57109	-	784	-	-	lptD	BW25113_0054	-
+-	57364	58179	+	271	-	-	djlA	BW25113_0055	-
+-	59687	60346	-	219	-	-	rluA	BW25113_0058	-
+probable ATP-dependent RNA helicase	60358	63264	-	968	-	-	rapA	BW25113_0059	-
+-	63429	65780	-	783	-	-	polB	BW25113_0060	-
+transcriptional regulator for ara operon	66874	67752	+	292	-	-	araC	BW25113_0064	-
+-	67838	68602	+	254	-	-	yabI	BW25113_0065	-
+putative ATP-binding component of a transport system	68716	69414	-	232	-	-	thiQ	BW25113_0066	-
+-	69398	71008	-	536	-	-	thiP	BW25113_0067	-
+thiamin-binding periplasmic protein%3B periplasmic-binding component of ABC superfamily	70984	71967	-	327	-	-	thiB	BW25113_0068	-
+putative transport protein	72131	73786	-	551	-	-	sgrR	BW25113_0069	-
+-	73854	74080	+	75	-	-	sgrS	BW25113_4577	-
+-	73875	74006	+	43	-	-	sgrT	BW25113_4662	-
+-	74108	75286	+	392	-	-	setA	BW25113_0070	-
+isopropylmalate isomerase subunit	75335	75940	-	201	-	-	leuD	BW25113_0071	-
+3-isopropylmalate isomerase (dehydratase) subunit	75951	77351	-	466	-	-	leuC	BW25113_0072	-
+-	77354	78445	-	363	-	-	leuB	BW25113_0073	-
+-	78445	80016	-	523	-	-	leuA	BW25113_0074	-
+-	80109	80195	-	28	-	-	leuL	BW25113_0075	-
+probable transcriptional activator for leuABCD operon	80855	81799	+	314	-	-	leuO	BW25113_0076	-
+acetolactate synthase III%2C valine sensitive%2C large subunit	82117	83841	+	574	-	-	ilvI	BW25113_0077	-
+acetolactate synthase III%2C valine sensitive%2C small subunit	83844	84335	+	163	-	-	ilvH	BW25113_0078	-
+transcriptional repressor of fru operon and others	84515	85519	+	334	-	-	cra	BW25113_0080	-
+-	86121	86579	+	152	-	-	mraZ	BW25113_0081	-
+putative apolipoprotein	86581	87522	+	313	-	-	rsmH	BW25113_0082	-
+cell division protein%3B ingrowth of wall at septum	87519	87884	+	121	-	-	ftsL	BW25113_0083	-
+septum formation%3B penicillin-binding protein 3%3B peptidoglycan synthetase	87900	89666	+	588	-	-	ftsI	BW25113_0084	-
+-	89653	91140	+	495	-	-	murE	BW25113_0085	-
+-	91137	92495	+	452	-	-	murF	BW25113_0086	-
+phospho-N-acetylmuramoyl-pentapeptide transferase?	92489	93571	+	360	-	-	mraY	BW25113_0087	-
+-	93574	94890	+	438	-	-	murD	BW25113_0088	-
+cell division%3B membrane protein involved in shape determination	94890	96134	+	414	-	-	ftsW	BW25113_0089	-
+-	96131	97198	+	355	-	-	murG	BW25113_0090	-
+-	97252	98727	+	491	-	-	murC	BW25113_0091	-
+D-alanine-D-alanine ligase B%2C affects cell division	98720	99640	+	306	-	-	ddlB	BW25113_0092	-
+cell division protein%3B ingrowth of wall at septum	99642	100472	+	276	-	-	ftsQ	BW25113_0093	-
+ATP-binding cell division protein%2C septation process%2C complexes with FtsZ%2C associated with junctions of inner and outer membranes	100469	101731	+	420	-	-	ftsA	BW25113_0094	-
+cell division%3B forms circumferential ring%3B tubulin-like GTP-binding protein and GTPase	101792	102943	+	383	-	-	ftsZ	BW25113_0095	-
+UDP-3-O-acyl N-acetylglucosamine deacetylase%3B lipid A biosynthesis	103044	103961	+	305	-	-	lpxC	BW25113_0096	-
+-	104192	104704	+	170	-	-	secM	BW25113_0097	-
+preprotein translocase%3B secretion protein	104766	107471	+	901	-	-	secA	BW25113_0098	-
+7%2C8-dihydro-8-oxoguanine-triphosphatase%2C prefers dGTP%2C causes AT-GC transversions	107531	107920	+	129	-	-	mutT	BW25113_0099	-
+-	108136	108333	-	65	-	-	yacG	BW25113_0101	-
+-	108343	109086	-	247	-	-	zapD	BW25113_0102	-
+putative DNA repair protein	109086	109706	-	206	-	-	coaE	BW25113_0103	-
+-	109931	110974	+	347	-	-	guaC	BW25113_0104	-
+putative integral membrane protein involved in biogenesis of fimbriae%2C protein transport%2C DNA uptake	111009	112211	-	400	-	-	hofC	BW25113_0106	-
+putative integral membrane protein involved in biogenesis of fimbriae%2C protein transport%2C DNA uptake	112201	113586	-	461	-	-	hofB	BW25113_0107	-
+prelipin peptidase dependent protein	113596	114036	-	146	-	-	ppdD	BW25113_0108	-
+-	114239	115132	-	297	-	-	nadC	BW25113_0109	-
+regulates ampC	115220	115771	+	183	-	-	ampD	BW25113_0110	-
+regulates ampC	115768	116622	+	284	-	-	ampE	BW25113_0111	-
+aromatic amino acid transport protein	116665	118038	-	457	-	-	aroP	BW25113_0112	-
+transcriptional regulator for pyruvate dehydrogenase complex	118579	119343	+	254	-	-	pdhR	BW25113_0113	-
+pyruvate dehydrogenase (decarboxylase component)	119504	122167	+	887	-	-	aceE	BW25113_0114	-
+pyruvate dehydrogenase (dihydrolipoyltransacetylase component)	122182	124074	+	630	-	-	aceF	BW25113_0115	-
+lipoamide dehydrogenase (NADH)%3B component of 2-oxodehydrogenase and pyruvate complexes%3B L-protein of glycine cleavage complex	124399	125823	+	474	-	-	lpd	BW25113_0116	-
+putative membrane protein	125894	127747	-	617	-	-	yacH	BW25113_0117	-
+aconitate hydrase B	128102	130699	+	865	-	-	acnB	BW25113_0118	-
+-	130875	131237	+	120	-	-	yacL	BW25113_0119	-
+-	131275	132069	-	264	-	-	speD	BW25113_0120	-
+spermidine synthase %3D putrescine aminopropyltransferase	132085	132951	-	288	-	-	speE	BW25113_0121	-
+-	133057	133404	-	115	-	-	yacC	BW25113_0122	-
+-	133570	135120	+	516	-	-	cueO	BW25113_0123	-
+-	135322	137712	-	796	-	-	gcd	BW25113_0124	-
+-	137918	138454	+	178	-	-	hpt	BW25113_0125	-
+putative carbonic anhdrase	138495	139157	-	220	-	-	can	BW25113_0126	-
+putative ATP-binding component of a transport system	139266	140192	+	308	-	-	yadG	BW25113_0127	-
+-	140189	140959	+	256	-	-	yadH	BW25113_0128	-
+putative PTS enzyme II B component	141064	141504	+	146	-	-	yadI	BW25113_0129	-
+conserved hypothetical protein	141568	142797	+	409	-	-	yadE	BW25113_0130	-
+-	142801	143181	-	126	-	-	panD	BW25113_0131	-
+-	143455	144357	+	300	-	-	yadD	BW25113_0132	-
+-	144431	145282	-	283	-	-	panC	BW25113_0133	-
+-	145294	146088	-	264	-	-	panB	BW25113_0134	-
+putative fimbrial-like protein	146202	147440	-	412	-	-	yadC	BW25113_0135	-
+putative fimbrial protein	147490	148086	-	198	-	-	yadK	BW25113_0136	-
+putative fimbrial protein	148113	148718	-	201	-	-	yadL	BW25113_0137	-
+putative fimbrial-like protein	148730	149299	-	189	-	-	yadM	BW25113_0138	-
+probable outer membrane porin protein involved in fimbrial assembly	149316	151913	-	865	-	-	htrE	BW25113_0139	-
+probable pilin chaperone similar to PapD	151948	152688	-	246	-	-	yadV	BW25113_0140	-
+putative fimbrial-like protein	152786	153370	-	194	-	-	yadN	BW25113_0141	-
+7%2C8-dihydro-6-hydroxymethylpterin- pyrophosphokinase	153740	154219	-	159	-	-	folK	BW25113_0142	-
+-	154216	155613	-	465	-	-	pcnB	BW25113_0143	-
+putative tRNA synthetase	155673	156599	-	308	-	-	gluQ	BW25113_0144	-
+dnaK suppressor protein	156636	157091	-	151	-	-	dksA	BW25113_0145	-
+probable regulator for maltose metabolism	157269	157973	-	234	-	-	sfsA	BW25113_0146	-
+-	157988	158518	-	176	-	-	ligT	BW25113_0147	-
+helicase%2C ATP-dependent	158592	161021	+	809	-	-	hrpB	BW25113_0148	-
+peptidoglycan synthetase%3B penicillin-binding protein 1B	161217	163751	+	844	-	-	mrcB	BW25113_0149	-
+outer membrane protein receptor for ferrichrome%2C colicin M%2C and phages T1%2C T5%2C and phi80	163971	166214	+	747	-	-	fhuA	BW25113_0150	-
+ATP-binding component of hydroxymate-dependent iron transport	166265	167062	+	265	-	-	fhuC	BW25113_0151	-
+hydroxamate-dependent iron uptake%2C cytoplasmic membrane component%3B periplasmic-binding component of ABC superfamily	167062	167952	+	296	-	-	fhuD	BW25113_0152	-
+-	167949	169931	+	660	-	-	fhuB	BW25113_0153	-
+-	170089	171369	-	426	-	-	hemL	BW25113_0154	-
+putative channel transporter	171594	173015	+	473	-	-	clcA	BW25113_0155	-
+-	173097	173441	+	114	-	-	erpA	BW25113_0156	-
+-	173488	174111	-	207	-	-	yadS	BW25113_0157	-
+-	174149	174949	-	266	-	-	btuF	BW25113_0158	-
+-	174942	175640	-	232	-	-	mtn	BW25113_0159	-
+-	175724	177241	+	505	-	-	dgt	BW25113_0160	-
+periplasmic serine protease Do%3B heat shock protein HtrA	177371	178795	+	474	-	-	degP	BW25113_0161	-
+-	178950	180107	+	385	-	-	cdaR	BW25113_0162	-
+putative structural protein	180196	180582	-	128	-	-	yaeH	BW25113_0163	-
+-	180744	181556	-	270	-	-	yaeI	BW25113_0164	-
+-	181610	182434	-	274	-	-	dapD	BW25113_0166	-
+protein PII%3B uridylyltransferase acts on regulator of glnA	182465	185137	-	890	-	-	glnD	BW25113_0167	-
+-	185199	185993	-	264	-	-	map	BW25113_0168	-
+-	186199	186334	+	45	-	-	tff	BW25113_4414	-
+-	186361	187086	+	241	-	-	rpsB	BW25113_0169	-
+-	187344	188195	+	283	-	-	tsf	BW25113_0170	-
+-	188342	189067	+	241	-	-	pyrH	BW25113_0171	-
+ribosome releasing factor	189359	189916	+	185	-	-	frr	BW25113_0172	-
+-	190008	191204	+	398	-	-	dxr	BW25113_0173	-
+undecaprenyl pyrophosphate synthetase (di-trans%2Cpoly-cis-decaprenylcistransferase)	191390	192151	+	253	-	-	ispU	BW25113_0174	-
+CDP-diglyceride synthetase	192164	193021	+	285	-	-	cdsA	BW25113_0175	-
+-	193033	194385	+	450	-	-	rseP	BW25113_0176	-
+putative outer membrane antigen	194415	196847	+	810	-	-	bamA	BW25113_0177	-
+periplasmic molecular chaperone for outer membrane proteins	196969	197454	+	161	-	-	skp	BW25113_0178	-
+-	197458	198483	+	341	-	-	lpxD	BW25113_0179	-
+-	198588	199043	+	151	-	-	fabZ	BW25113_0180	-
+UDP-N-acetylglucosamine acetyltransferase%3B lipid A biosynthesis	199047	199835	+	262	-	-	lpxA	BW25113_0181	-
+tetraacyldisaccharide-1-P%3B lipid A biosynthesis%2C penultimate step	199835	200983	+	382	-	-	lpxB	BW25113_0182	-
+RNAse HII%2C degrades RNA of DNA-RNA hybrids	200980	201576	+	198	-	-	rnhB	BW25113_0183	-
+DNA polymerase III%2C alpha subunit	201613	205095	+	1160	-	-	dnaE	BW25113_0184	-
+acetylCoA carboxylase%2C carboxytransferase component%2C alpha subunit	205108	206067	+	319	-	-	accA	BW25113_0185	-
+-	206166	208307	+	713	-	-	ldcC	BW25113_0186	-
+-	208364	208753	+	129	-	-	yaeR	BW25113_0187	-
+-	208818	210116	+	432	-	-	tilS	BW25113_0188	-
+-	210165	210419	-	84	-	-	rof	BW25113_0189	-
+conserved hypothetical protein	210412	210612	-	66	-	-	yaeP	BW25113_4406	-
+-	210778	211323	+	181	-	-	yaeQ	BW25113_0190	-
+-	211320	211742	+	140	-	-	arfB	BW25113_0191	-
+copper homeostasis protein (lipoprotein)	211756	212466	+	236	-	-	nlpE	BW25113_0192	-
+-	212666	213490	-	274	-	-	yaeF	BW25113_0193	-
+proline tRNA synthetase	213544	215262	-	572	-	-	proS	BW25113_0194	-
+-	215374	216081	-	235	-	-	tsaA	BW25113_0195	-
+regulator in colanic acid synthesis%3B interacts with RcsB	216078	216482	-	134	-	-	rcsF	BW25113_0196	-
+D-methionine transport protein (ABC superfamily%2C peri_bind)	216600	217415	-	271	-	-	metQ	BW25113_0197	-
+D- and L-methionine transport protein (ABC superfamily%2C membrane)	217455	218108	-	217	-	-	metI	BW25113_0198	-
+D- and L-methionine transport protein (ABC superfamily%2C atp_bind)	218101	219132	-	343	-	-	metN	BW25113_0199	-
+-	219320	219895	+	191	-	-	gmhB	BW25113_0200	-
+-	220258	221799	+	513	-	-	rrsH	BW25113_0201	-
+-	221868	221944	+	25	-	-	ileV	BW25113_0202	-
+-	221987	222062	+	25	-	-	alaV	BW25113_0203	-
+-	222246	225149	+	967	-	-	rrlH	BW25113_0204	-
+-	225243	225362	+	39	-	-	rrfH	BW25113_0205	-
+-	225415	225491	+	25	-	-	aspU	BW25113_0206	-
+-	225654	226457	+	267	-	-	dkgB	BW25113_0207	-
+putative transcriptional regulator LYSR-type	226454	227368	-	304	-	-	yafC	BW25113_0208	-
+-	227609	228409	+	266	-	-	yafD	BW25113_0209	-
+putative biotin synthesis protein	228413	229036	+	207	-	-	yafE	BW25113_0210	-
+-	229084	230442	-	452	-	-	mltD	BW25113_0211	-
+probable hydroxyacylglutathione hydrolase	230514	231269	-	251	-	-	gloB	BW25113_0212	-
+-	231303	232025	+	240	-	-	yafS	BW25113_0213	-
+RNase HI%2C degrades RNA of DNA-RNA hybrids%2C participates in DNA replication	232022	232489	-	155	-	-	rnhA	BW25113_0214	-
+DNA polymerase III%2C epsilon subunit	232554	233285	+	243	-	-	dnaQ	BW25113_0215	-
+-	233418	233494	+	25	-	-	aspV	BW25113_0216	-
+putative aminopeptidase	233822	234607	+	261	-	-	yafT	BW25113_0217	-
+-	234744	235223	-	159	-	-	ykfM	BW25113_4586	-
+putative EC 3.5. amidase-type enzyme	235906	236676	-	256	-	-	yafV	BW25113_0219	-
+inhibitor of vertebrate C-type lysozyme%2C periplasmic	236830	237303	+	157	-	-	ivy	BW25113_0220	-
+-	237346	239790	-	814	-	-	fadE	BW25113_0221	-
+phosphoheptose isomerase	240030	240608	+	192	-	-	gmhA	BW25113_0222	-
+putative amidotransferase	240814	241581	+	255	-	-	yafJ	BW25113_0223	-
+-	241552	242292	-	246	-	-	yafK	BW25113_0224	-
+-	242448	242726	-	92	-	-	yafQ	BW25113_0225	-
+damage-inducible protein J	242729	242989	-	86	-	-	dinJ	BW25113_0226	-
+putative lipoprotein	243199	243948	+	249	-	-	yafL	BW25113_0227	-
+-	244124	244621	+	165	-	-	rayT	BW25113_0228	-
+DNA polymerase IV%3B DNA polymerase IV%2C devoid of proofreading%2C damage-inducible protein P	247385	248440	+	351	-	-	dinB	BW25113_0231	-
+-	248492	248785	+	97	-	-	yafN	BW25113_0232	-
+-	248788	249186	+	132	-	-	yafO	BW25113_0233	-
+-	249196	249648	+	150	-	-	yafP	BW25113_0234	-
+-	250746	252203	-	485	-	-	pepD	BW25113_0237	-
+-	252464	252922	+	152	-	-	gpt	BW25113_0238	-
+-	253014	254258	+	414	-	-	frsA	BW25113_0239	-
+sigma factor-binding protein%2C stimulates RNA polymerase holoenzyme formation%3Bregulator%3B Surface structures%3B transcriptional regulator of cryptic csgA gene for curli surface fibers	254316	254717	+	133	-	-	crl	BW25113_0240	-
+outer membrane pore protein E (E%2CIc%2CNmpAB)	254756	255811	-	351	-	-	phoE	BW25113_0241	-
+-	256099	257202	+	367	-	-	proB	BW25113_0242	-
+-	257214	258467	+	417	-	-	proA	BW25113_0243	-
+-	258582	258657	+	25	-	-	thrW	BW25113_0244	-
+-	259039	259380	-	113	-	-	ykfI	BW25113_0245	-
+-	259401	259718	-	105	-	-	yafW	BW25113_0246	-
+-	259737	259958	-	73	-	-	ykfH	BW25113_4504	-
+putative DNA repair protein	259967	260443	-	158	-	-	ykfG	BW25113_0247	-
+-	260459	260917	-	152	-	-	yafX	BW25113_0248	-
+-	261015	261254	-	79	-	-	ykfF	BW25113_0249	-
+-	261331	261798	-	155	-	-	ykfB	BW25113_0250	-
+hypothetical transcriptional regulator	261821	262264	-	147	-	-	yafY	BW25113_0251	-
+-	262895	263716	-	273	-	-	yafZ	BW25113_0252	-
+putative GTP-binding protein	263808	264671	-	287	-	-	ykfA	BW25113_0253	-
+peroxide resistance protein	265000	265893	-	297	-	-	perR	BW25113_0254	-
+-	266314	267465	+	383	-	-	insI1	BW25113_0256	-
+-	268291	268365	+	24	-	-	eyeA	BW25113_4690	-
+-	269812	270828	-	338	-	-	insH1	BW25113_0259	-
+-	271036	272439	+	467	-	-	mmuP	BW25113_0260	-
+-	272426	273358	+	310	-	-	mmuM	BW25113_0261	-
+putative ATP-binding component of a transport system	273467	274513	-	348	-	-	afuC	BW25113_0262	-
+-	274889	275392	-	167	-	-	insB1	BW25113_0264	-
+-	275311	275586	-	91	-	-	insA	BW25113_0265	-
+-	276540	277694	-	384	-	-	yagA	BW25113_0267	-
+putative lyase/synthase	277989	278897	+	302	-	-	yagE	BW25113_0268	-
+putative dehydratase	278912	280879	+	655	-	-	yagF	BW25113_0269	-
+putative permease	281106	282488	+	460	-	-	yagG	BW25113_0270	-
+putative beta-xylosidase	282500	284110	+	536	-	-	yagH	BW25113_0271	-
+putative regulator	284115	284873	-	252	-	-	yagI	BW25113_0272	-
+ornithine carbamoyltransferase 2%2C chain F	285012	286016	-	334	-	-	argF	BW25113_0273	-
+-	286360	286863	-	167	-	-	insB1	BW25113_0274	-
+-	286782	287057	-	91	-	-	insA	BW25113_0275	-
+-	288033	288659	-	208	-	-	yagK	BW25113_0277	-
+DNA-binding protein	288931	289629	-	232	-	-	yagL	BW25113_0278	-
+-	289656	290510	-	284	-	-	yagM	BW25113_0279	-
+-	290850	291290	-	146	-	-	yagN	BW25113_0280	-
+putative phage integrase	291407	292807	-	466	-	-	intF	BW25113_0281	-
+-	293481	294437	-	318	-	-	paoD	BW25113_0283	-
+-	294447	296645	-	732	-	-	paoC	BW25113_0284	-
+-	296642	297598	-	318	-	-	paoB	BW25113_0285	-
+putative xanthine dehydrogenase	297595	298284	-	229	-	-	paoA	BW25113_0286	-
+-	298702	299316	+	204	-	-	yagU	BW25113_0287	-
+putative ferredoxin	299564	299893	-	109	-	-	ykgJ	BW25113_0288	-
+-	300206	300916	-	236	-	-	ecpE	BW25113_0289	-
+putative receptor	300885	302528	-	547	-	-	ecpD	BW25113_0290	-
+putative enzyme	302518	305043	-	841	-	-	ecpC	BW25113_0291	-
+-	305069	305737	-	222	-	-	ecpB	BW25113_0292	-
+-	305795	306382	-	195	-	-	ecpA	BW25113_0293	-
+putative regulator	306457	307047	-	196	-	-	ecpR	BW25113_0294	-
+-	307823	308050	+	75	-	-	ykgL	BW25113_0295	-
+-	308085	308225	-	46	-	-	ykgO	BW25113_4506	-
+-	308225	308488	-	87	-	-	ykgM	BW25113_0296	-
+-	308852	308953	-	33	-	-	ykgR	BW25113_4671	-
+-	311002	311301	+	99	-	-	insE1	BW25113_0298	-
+-	311298	312164	+	288	-	-	insF1	BW25113_0299	-
+-	313437	314030	-	197	-	-	rclC	BW25113_0301	-
+the overlapping ORF b0302 on the opposite strand is no longer thought to be an actual gene%2C and has been deaccessioned	314042	314278	-	78	-	-	rclB	BW25113_0303	-
+putative oxidoreductase	314387	315712	-	441	-	-	rclA	BW25113_0304	-
+putative ARAC-type regulatory protein	315938	316792	+	284	-	-	rclR	BW25113_0305	-
+putative dehydrogenase subunit	317319	318038	+	239	-	-	ykgE	BW25113_0306	-
+-	318049	319476	+	475	-	-	ykgF	BW25113_0307	-
+putative transporter	319469	320164	+	231	-	-	ykgG	BW25113_0308	-
+-	320407	321075	-	222	-	-	ykgH	BW25113_0310	-
+-	321288	322958	-	556	-	-	betA	BW25113_0311	-
+NAD+-dependent betaine aldehyde dehydrogenase	322972	324444	-	490	-	-	betB	BW25113_0312	-
+probably transcriptional repressor of bet genes	324458	325045	-	195	-	-	betI	BW25113_0313	-
+high-affinity choline transport	325174	327207	+	677	-	-	betT	BW25113_0314	-
+-	328082	329170	+	362	-	-	yahA	BW25113_0315	-
+putative transcriptional regulator LYSR-type	329212	330144	-	310	-	-	yahB	BW25113_0316	-
+-	330236	330733	-	165	-	-	yahC	BW25113_0317	-
+putative transcription factor	330991	331596	+	201	-	-	yahD	BW25113_0318	-
+-	331636	332499	+	287	-	-	yahE	BW25113_0319	-
+putative oxidoreductase subunit	332489	334036	+	515	-	-	yahF	BW25113_0320	-
+-	334036	335454	+	472	-	-	yahG	BW25113_0321	-
+putative kinase	335876	336826	+	316	-	-	yahI	BW25113_0323	-
+putative deaminase	336836	338218	+	460	-	-	yahJ	BW25113_0324	-
+putative oxidoreductase	338595	339644	+	349	-	-	yahK	BW25113_0325	-
+-	339887	340702	+	271	-	-	yahL	BW25113_0326	-
+-	341115	341360	+	81	-	-	yahM	BW25113_0327	-
+putative cytochrome subunit of dehydrogenase	341377	342048	-	223	-	-	yahN	BW25113_0328	-
+-	342195	342470	+	91	-	-	yahO	BW25113_0329	-
+regulator for prp operon	342568	344154	-	528	-	-	prpR	BW25113_0330	-
+putative phosphonomutase 2	344393	345283	+	296	-	-	prpB	BW25113_0331	-
+putative citrate synthase%3B propionate metabolism?	345723	346892	+	389	-	-	prpC	BW25113_0333	-
+-	346926	348377	+	483	-	-	prpD	BW25113_0334	-
+putative propionyl-CoA synthetase	348417	350303	+	628	-	-	prpE	BW25113_0335	-
+cytosine permease/transport	350633	351892	+	419	-	-	codB	BW25113_0336	-
+-	351882	353165	+	427	-	-	codA	BW25113_0337	-
+cyn operon positive regulator	353502	354401	-	299	-	-	cynR	BW25113_0338	-
+-	354510	355169	+	219	-	-	cynT	BW25113_0339	-
+cyanate aminohydrolase%2C cyanase	355200	355670	+	156	-	-	cynS	BW25113_0340	-
+cyanate transport	355703	356857	+	384	-	-	cynX	BW25113_0341	-
+-	356960	357571	-	203	-	-	lacA	BW25113_0342	-
+galactoside permease (lactose permease%2C M protein) (MFS family)	357637	358890	-	417	-	-	lacY	BW25113_0343	-
+transcriptional repressor of the lac operon	360661	361743	-	360	-	-	lacI	BW25113_0345	-
+transcriptional regulator for mhp operon	361820	362653	-	277	-	-	mhpR	BW25113_0346	-
+-	362844	364508	+	554	-	-	mhpA	BW25113_0347	-
+-	364510	365454	+	314	-	-	mhpB	BW25113_0348	-
+-	367571	368380	+	269	-	-	mhpD	BW25113_0350	-
+acetaldehyde dehydrogenase	368377	369327	+	316	-	-	mhpF	BW25113_0351	-
+4-hydroxy-2-ketovalerate aldolase	369324	370337	+	337	-	-	mhpE	BW25113_0352	-
+putative transport protein	370915	372126	+	403	-	-	mhpT	BW25113_0353	-
+-	372228	372767	+	179	-	-	yaiL	BW25113_0354	-
+putative S-formylglutathione hydrolase	372991	373824	-	277	-	-	frmB	BW25113_0355	-
+alcohol dehydrogenase class III%3B formaldehyde dehydrogenase%2C glutathione-dependent	373918	375027	-	369	-	-	frmA	BW25113_0356	-
+repressor of frmRAB	375062	375337	-	91	-	-	frmR	BW25113_0357	-
+-	375525	376298	-	257	-	-	yaiO	BW25113_0358	-
+-	376807	377172	+	121	-	-	insC1	BW25113_0360	-
+-	377130	378035	+	301	-	-	insD1	BW25113_0361	-
+polysaccharide metabolism	378195	379391	-	398	-	-	yaiP	BW25113_0363	-
+-	379515	380072	-	185	-	-	yaiS	BW25113_0364	-
+taurine transport system periplasmic protein	380688	381650	+	320	-	-	tauA	BW25113_0365	-
+taurine ATP-binding component of a transport system	381663	382430	+	255	-	-	tauB	BW25113_0366	-
+taurine transport system permease protein	382427	383254	+	275	-	-	tauC	BW25113_0367	-
+-	383251	384102	+	283	-	-	tauD	BW25113_0368	-
+5-aminolevulinate dehydratase %3D porphobilinogen synthase	384209	385183	-	324	-	-	hemB	BW25113_0369	-
+-	387195	388061	-	288	-	-	insF1	BW25113_0372	-
+-	388058	388357	-	99	-	-	insE1	BW25113_0373	-
+-	389962	390585	+	207	-	-	yaiV	BW25113_0375	-
+-	390586	391743	-	385	-	-	ampH	BW25113_0376	-
+sensitivity to microcin B17%2C possibly envelop protein	392095	393315	+	406	-	-	sbmA	BW25113_0377	-
+-	393328	394422	+	364	-	-	yaiW	BW25113_0378	-
+-	394481	394789	-	102	-	-	yaiY	BW25113_0379	-
+-	395049	395261	+	70	-	-	yaiZ	BW25113_0380	-
+-	395285	396379	-	364	-	-	ddlA	BW25113_0381	-
+-	396842	397102	+	86	-	-	iraP	BW25113_0382	-
+alkaline phosphatase%3B start codon corrected	397203	398618	+	471	-	-	phoA	BW25113_0383	-
+induced by phosphate starvation	398737	399057	+	106	-	-	psiF	BW25113_0384	-
+-	399159	400274	+	371	-	-	yaiC	BW25113_0385	-
+pyrroline-5-carboxylate reductase	400291	401100	-	269	-	-	proC	BW25113_0386	-
+-	401220	401678	+	152	-	-	yaiI	BW25113_0387	-
+-	401861	402385	+	174	-	-	aroL	BW25113_0388	-
+-	402435	402626	+	63	-	-	yaiA	BW25113_0389	-
+protein of aro operon%2C regulated by aroR	402884	403561	+	225	-	-	aroM	BW25113_0390	-
+-	403633	403917	+	94	-	-	yaiE	BW25113_0391	-
+-	404564	405475	-	303	-	-	rdgC	BW25113_0393	-
+possible NAGC-like transcriptional regulator	405600	406508	+	302	-	-	mak	BW25113_0394	-
+involved in either transport or processing of arabinose polymers	406753	407937	-	394	-	-	araJ	BW25113_0396	-
+ATP-dependent dsDNA exonuclease	408063	411209	-	1048	-	-	sbcC	BW25113_0397	-
+ATP-dependent dsDNA exonuclease	411206	412408	-	400	-	-	sbcD	BW25113_0398	-
+positive response regulator for pho regulon%2C sensor is PhoR (or CreC)	412598	413287	+	229	-	-	phoB	BW25113_0399	-
+positive and negative sensor protein for pho regulon	413345	414640	+	431	-	-	phoR	BW25113_0400	-
+branched chain amino acid transport system II carrier protein	415047	416366	+	439	-	-	brnQ	BW25113_0401	-
+proline permease transport protein	416442	417815	+	457	-	-	proY	BW25113_0402	-
+-	417974	419788	+	604	-	-	malZ	BW25113_0403	-
+putative glycoprotein	419793	420374	-	193	-	-	acpH	BW25113_0404	-
+synthesis of queuine in tRNA%3B probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase	420467	421537	+	356	-	-	queA	BW25113_0405	-
+-	421593	422720	+	375	-	-	tgt	BW25113_0406	-
+-	422743	423075	+	110	-	-	yajC	BW25113_0407	-
+protein secretion%3B membrane protein%2C part of the channel	423103	424950	+	615	-	-	secD	BW25113_0408	-
+protein secretion%2C membrane protein	424961	425932	+	323	-	-	secF	BW25113_0409	-
+-	426061	426408	+	115	-	-	yajD	BW25113_0410	-
+nucleoside channel%3B receptor of phage T6 and colicin K	426585	427469	-	294	-	-	tsx	BW25113_0411	-
+-	427768	428307	-	179	-	-	yajI	BW25113_0412	-
+-	428458	428907	+	149	-	-	nrdR	BW25113_0413	-
+-	428911	430014	+	367	-	-	ribD	BW25113_0414	-
+riboflavin synthase%2C beta chain	430103	430573	+	156	-	-	ribE	BW25113_0415	-
+transcription termination%3B L factor	430593	431012	+	139	-	-	nusB	BW25113_0416	-
+-	431090	432067	+	325	-	-	thiL	BW25113_0417	-
+phosphatidylglycerophosphatase	432045	432563	+	172	-	-	pgpA	BW25113_0418	-
+putative NAD(P)H-dependent xylose reductase	432617	433591	-	324	-	-	yajO	BW25113_0419	-
+1-deoxyxylulose-5-phosphate synthase%3B flavoprotein	433771	435633	-	620	-	-	dxs	BW25113_0420	-
+-	435658	436557	-	299	-	-	ispA	BW25113_0421	-
+exonuclease VII%2C small subunit	436557	436799	-	80	-	-	xseB	BW25113_0422	-
+-	437005	438453	+	482	-	-	thiI	BW25113_0423	-
+-	438507	439097	-	196	-	-	yajL	BW25113_0424	-
+2-dehydropantoate 2-reductase	439060	439971	-	303	-	-	panE	BW25113_0425	-
+-	440139	440630	+	163	-	-	yajQ	BW25113_0426	-
+putative transport protein	440758	442122	-	454	-	-	yajR	BW25113_0427	-
+protoheme IX farnesyltransferase (haeme O biosynthesis)	442271	443161	-	296	-	-	cyoE	BW25113_0428	-
+-	443173	443502	-	109	-	-	cyoD	BW25113_0429	-
+-	443502	444116	-	204	-	-	cyoC	BW25113_0430	-
+-	444106	446097	-	663	-	-	cyoB	BW25113_0431	-
+-	446119	447066	-	315	-	-	cyoA	BW25113_0432	-
+regulates beta-lactamase synthesis	447526	449001	-	491	-	-	ampG	BW25113_0433	-
+putative polymerase/proteinase	449045	449623	-	192	-	-	yajG	BW25113_0434	-
+possible regulator of murein genes	449928	450245	+	105	-	-	bolA	BW25113_0435	-
+trigger factor%3B a molecular chaperone involved in cell division	450589	451887	+	432	-	-	tig	BW25113_0436	-
+ATP-dependent proteolytic subunit of clpA-clpP serine protease%2C heat shock protein F21.5	452133	452756	+	207	-	-	clpP	BW25113_0437	-
+ATP-dependent specificity component of clpP serine protease%2C chaperone	452882	454156	+	424	-	-	clpX	BW25113_0438	-
+DNA-binding%2C ATP-dependent protease La%3B heat shock K-protein	454344	456698	+	784	-	-	lon	BW25113_0439	-
+DNA-binding protein HU-beta%2C NS1 (HU-1)	456907	457179	+	90	-	-	hupB	BW25113_0440	-
+-	457371	459242	+	623	-	-	ppiD	BW25113_0441	-
+-	459393	459764	+	123	-	-	ybaV	BW25113_0442	-
+-	459858	460256	+	132	-	-	fadM	BW25113_0443	-
+-	460308	461003	-	231	-	-	queC	BW25113_0444	-
+-	461068	462768	-	566	-	-	ybaE	BW25113_0445	-
+-	462868	463686	+	272	-	-	cof	BW25113_0446	-
+putative LRP-like transcriptional regulator	463839	464297	+	152	-	-	ybaO	BW25113_0447	-
+-	464327	466099	+	590	-	-	mdlA	BW25113_0448	-
+-	466092	467873	+	593	-	-	mdlB	BW25113_0449	-
+nitrogen regulatory protein P-II 2	468054	468392	+	112	-	-	glnK	BW25113_0450	-
+probable ammonium transporter	468422	469708	+	428	-	-	amtB	BW25113_0451	-
+-	469757	470617	-	286	-	-	tesB	BW25113_0452	-
+glycoprotein/polysaccharide metabolism	470835	471407	+	190	-	-	ybaY	BW25113_0453	-
+-	471438	471827	-	129	-	-	ybaZ	BW25113_0454	-
+-	471904	472017	+	37	-	-	ffs	BW25113_0455	-
+-	472128	472481	+	117	-	-	ybaA	BW25113_0456	-
+-	472523	474073	-	516	-	-	ylaB	BW25113_0457	-
+-	474237	474707	-	156	-	-	ylaC	BW25113_0458	-
+-	474823	475374	-	183	-	-	maa	BW25113_0459	-
+haemolysin expression modulating protein	475546	475764	-	72	-	-	hha	BW25113_0460	-
+-	475790	476164	-	124	-	-	tomB	BW25113_0461	-
+acridine efflux pump	476710	479859	-	1049	-	-	acrB	BW25113_0462	-
+acridine efflux pump	479882	481075	-	397	-	-	acrA	BW25113_0463	-
+acrAB operon repressor	481217	481864	+	215	-	-	acrR	BW25113_0464	-
+mechanosensitive channel protein	481992	485354	+	1120	-	-	mscK	BW25113_0465	-
+-	485566	485727	-	53	-	-	ybaM	BW25113_0466	-
+-	485741	486268	-	175	-	-	priC	BW25113_0467	-
+putative gene 58	486338	486715	+	125	-	-	ybaN	BW25113_0468	-
+-	486868	487419	+	183	-	-	apt	BW25113_0469	-
+DNA polymerase III%2C tau and gamma subunits%3B DNA elongation factor III	487548	489479	+	643	-	-	dnaX	BW25113_0470	-
+-	489532	489861	+	109	-	-	ybaB	BW25113_0471	-
+recombination and repair	489861	490466	+	201	-	-	recR	BW25113_0472	-
+chaperone Hsp90%2C heat shock protein C 62.5	490576	492450	+	624	-	-	htpG	BW25113_0473	-
+adenylate kinase activity%3B pleiotropic effects on glycerol-3-phosphate acyltransferase activity	492631	493275	+	214	-	-	adk	BW25113_0474	-
+ferrochelatase: final enzyme of heme biosynthesis	493511	494473	+	320	-	-	hemH	BW25113_0475	-
+-	494470	495429	-	319	-	-	aes	BW25113_0476	-
+inosine-guanosine kinase	495581	496885	+	434	-	-	gsk	BW25113_0477	-
+putative transport protein	497018	498694	-	558	-	-	ybaL	BW25113_0478	-
+fosmidomycin resistance protein	498932	500152	-	406	-	-	fsr	BW25113_0479	-
+UDP-sugar hydrolase (5'-nucleotidase)	500370	502022	+	550	-	-	ushA	BW25113_0480	-
+-	502059	502538	-	159	-	-	ybaK	BW25113_0481	-
+-	502660	502743	+	27	-	-	chiX	BW25113_4585	-
+putative ligase	502742	503536	-	264	-	-	ybaP	BW25113_0482	-
+-	503674	504015	+	113	-	-	ybaQ	BW25113_0483	-
+-	504331	506835	-	834	-	-	copA	BW25113_0484	-
+putative glutaminase	507097	508029	+	310	-	-	glsA	BW25113_0485	-
+putative amino acid/amine transport protein	508032	509324	+	430	-	-	ybaT	BW25113_0486	-
+-	509449	509856	+	135	-	-	cueR	BW25113_0487	-
+-	509857	510315	-	152	-	-	ybbJ	BW25113_0488	-
+putative protease	510312	511229	-	305	-	-	qmcA	BW25113_0489	-
+putative ATP-binding component of a transport system	511375	512052	+	225	-	-	fetA	BW25113_0490	-
+putative metal resistance protein	512039	512818	+	259	-	-	fetB	BW25113_0491	-
+putative thioredoxin-like protein	512881	513735	-	284	-	-	ybbN	BW25113_0492	-
+-	513796	514605	-	269	-	-	ybbO	BW25113_0493	-
+acyl-CoA thioesterase I%3B also functions as protease I	514595	515221	-	208	-	-	tesA	BW25113_0494	-
+putative ATP-binding component of a transport system	515189	515875	+	228	-	-	ybbA	BW25113_0495	-
+putative oxidoreductase	515872	518286	+	804	-	-	ybbP	BW25113_0496	-
+rhsD protein in rhs element	518717	522997	+	1426	-	-	rhsD	BW25113_0497	-
+-	523037	523405	+	122	-	-	ybbC	BW25113_0498	-
+putative capsule anchoring protein	525588	526682	-	364	-	-	mnmH	BW25113_0503	-
+putative transcriptional regulator LYSR-type	526751	527677	-	308	-	-	allS	BW25113_0504	-
+-	527907	528389	+	160	-	-	allA	BW25113_0505	-
+-	528467	529282	+	271	-	-	allR	BW25113_0506	-
+-	529372	531153	+	593	-	-	gcl	BW25113_0507	-
+-	531166	531942	+	258	-	-	hyi	BW25113_0508	-
+-	532042	532920	+	292	-	-	glxR	BW25113_0509	-
+-	533089	534543	+	484	-	-	ybbW	BW25113_0511	-
+-	534603	535964	+	453	-	-	allB	BW25113_0512	-
+-	536021	537322	+	433	-	-	ybbY	BW25113_0513	-
+-	537344	538489	+	381	-	-	glxK	BW25113_0514	-
+-	538717	539502	-	261	-	-	allE	BW25113_0515	-
+-	539513	540748	-	411	-	-	allC	BW25113_0516	-
+-	540770	541819	-	349	-	-	allD	BW25113_0517	-
+involved in protein transport%3B multicopy suppressor of dominant negative ftsH mutants	542136	543803	+	555	-	-	fdrA	BW25113_0518	-
+-	543813	545072	+	419	-	-	ylbE	BW25113_4572	-
+putative carboxylase	545083	545898	+	271	-	-	ylbF	BW25113_0520	-
+putative carbamate kinase	545895	546788	+	297	-	-	ybcF	BW25113_0521	-
+phosphoribosylaminoimidazole carboxylase %3D AIR carboxylase%2C CO(2)-fixing subunit	546983	548050	-	355	-	-	purK	BW25113_0522	-
+phosphoribosylaminoimidazole carboxylase %3D AIR carboxylase%2C catalytic subunit	548047	548556	-	169	-	-	purE	BW25113_0523	-
+-	548674	549396	-	240	-	-	lpxH	BW25113_0524	-
+-	549399	549893	-	164	-	-	ppiB	BW25113_0525	-
+cysteine tRNA synthetase	550067	551452	+	461	-	-	cysS	BW25113_0526	-
+-	551488	552009	-	173	-	-	ybcI	BW25113_0527	-
+-	552117	552329	-	70	-	-	ybcJ	BW25113_0528	-
+5%2C10-methylene-tetrahydrofolate dehydrogenase%3B 5%2C10-methylene-tetrahydrofolate cyclohydrolase	552331	553197	-	288	-	-	folD	BW25113_0529	-
+putative fimbrial-like protein	553668	554210	+	180	-	-	sfmA	BW25113_0530	-
+putative chaperone	554430	555122	+	230	-	-	sfmC	BW25113_0531	-