Mercurial > repos > iuc > transit_resampling

changeset 5:885459e1c83b draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit d1f8cb0c56e082656c5d4a8729e612bdc5b6e3cc"
author iuc
date Sat, 27 Nov 2021 09:49:19 +0000
parents ad4d42fabf32
children
files macros.xml transit_resampling.xml
diffstat 2 files changed, 10 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Fri Jan 31 10:48:01 2020 -0500
+++ b/macros.xml	Sat Nov 27 09:49:19 2021 +0000
@@ -6,13 +6,19 @@
 			<yield />
 		</citations>
 	</xml>
+    <xml name="bio_tools">
+        <xrefs>
+            <xref type="bio.tools">transit</xref>
+        </xrefs>
+    </xml>
 	<xml name="requirements">
 		<requirements>
-			<requirement type="package" version="@VERSION@">transit</requirement>
+			<requirement type="package" version="@TOOL_VERSION@">transit</requirement>
 			<yield />
 		</requirements>
 	</xml>
-	<token name="@VERSION@">3.0.2</token>
+	<token name="@TOOL_VERSION@">3.0.2</token>
+	<token name="@VERSION_SUFFIX@">1</token>
 	<xml name="outputs">
         <yield />
         <data name="sites" from_work_dir="transit_out.txt" format="tabular" label="${tool.name} on ${on_string} Sites" />
--- a/transit_resampling.xml	Fri Jan 31 10:48:01 2020 -0500
+++ b/transit_resampling.xml	Sat Nov 27 09:49:19 2021 +0000
@@ -1,6 +1,7 @@
 <?xml version="1.0"?>
-<tool id="transit_resampling" name="Resampling" version="@VERSION@+galaxy0">
+<tool id="transit_resampling" name="TRANSIT Resampling" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
     <description>- determine per-gene p-values</description>
+    <expand macro="bio_tools"/>
     <macros>
         <import>macros.xml</import>
     </macros>
@@ -38,7 +39,6 @@
             <param name="controls" ftype="wig" value="transit-co1-rep1.wig,transit-co1-rep2.wig,transit-co1-rep3.wig" />
             <param name="annotation" ftype="tabular" value="transit-in1.prot" />
             <param name="samples" value="1000" />
-            <param name="burnin" value="100" />
             <param name="replicates" value="Replicates" />
             <output name="sites" file="resampling-sites1.txt" ftype="tabular" compare="sim_size" />
         </test>