Mercurial > repos > iuc > transit_tn5gaps
diff test-data/gff_to_prot-out1.txt @ 0:e4f44f327cf1 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit f63413d629e4de3c69984b3a96ad8ccfe0d47ada"
| author | iuc |
|---|---|
| date | Tue, 08 Oct 2019 08:24:46 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gff_to_prot-out1.txt Tue Oct 08 08:24:46 2019 -0400 @@ -0,0 +1,247 @@ +binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication%3B can also affect transcription of multiple genes including itself. 517 1878 + 453 - - dnaA SAOUHSC_00001 - +binds the polymerase to DNA and acts as a sliding clamp 2156 3289 + 377 - - SAOUHSC_00002 SAOUHSC_00002 - +conserved hypothetical protein 3670 3915 + 81 - - SAOUHSC_00003 SAOUHSC_00003 - +Required for DNA replication%3B binds preferentially to single-stranded%2C linear DNA 3912 5024 + 370 - - recF SAOUHSC_00004 - +DNA gyrase%2C B subunit 5034 6968 + 644 - - SAOUHSC_00005 SAOUHSC_00005 - +DNA gyrase%2C A subunit 7005 9668 + 887 - - SAOUHSC_00006 SAOUHSC_00006 - +conserved hypothetical protein 9755 10456 - 233 - - SAOUHSC_00007 SAOUHSC_00007 - +catalyzes the degradation of histidine to urocanate and ammmonia 10893 12407 + 504 - - SAOUHSC_00008 SAOUHSC_00008 - +catalyzes a two-step reaction%2C first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA 12786 14072 + 428 - - SAOUHSC_00009 SAOUHSC_00009 - +conserved hypothetical protein 14722 15417 + 231 - - SAOUHSC_00010 SAOUHSC_00010 - +conserved hypothetical protein 15414 15743 + 109 - - SAOUHSC_00012 SAOUHSC_00012 - +conserved hypothetical protein 16106 17074 + 322 - - SAOUHSC_00013 SAOUHSC_00013 - +conserved hypothetical protein 17365 18303 + 312 - - SAOUHSC_00014 SAOUHSC_00014 - +conserved hypothetical protein 18318 20285 + 655 - - SAOUHSC_00015 SAOUHSC_00015 - +in Escherichia coli this protein is wrapped around the base of the L1 stalk 20282 20734 + 150 - - rplI SAOUHSC_00017 - +replicative DNA helicase 20766 22166 + 466 - - SAOUHSC_00018 SAOUHSC_00018 - +catalyzes the formation of N6-(1%2C2%2C-dicarboxyethyl)-AMP from L-aspartate%2C inosine monophosphate and GTP in AMP biosynthesis 22444 23727 + 427 - - SAOUHSC_00019 SAOUHSC_00019 - +- 24157 24231 + 24 - - SAOUHSC_T00018 SAOUHSC_T00018 - +- 24239 24311 + 24 - - SAOUHSC_T00011 SAOUHSC_T00011 - +two-component response regulator%2C putative 24931 25632 + 233 - - SAOUHSC_00020 SAOUHSC_00020 - +sensory box histidine kinase VicK%2C putative 25645 27471 + 608 - - SAOUHSC_00021 SAOUHSC_00021 - +conserved hypothetical protein 27515 28798 + 427 - - SAOUHSC_00022 SAOUHSC_00022 - +conserved hypothetical protein 28799 29587 + 262 - - SAOUHSC_00023 SAOUHSC_00023 - +conserved hypothetical protein 29977 30777 + 266 - - SAOUHSC_00024 SAOUHSC_00024 - +conserved hypothetical protein 31005 33323 + 772 - - SAOUHSC_00025 SAOUHSC_00025 - +conserved hypothetical protein 33555 34034 - 159 - - SAOUHSC_00026 SAOUHSC_00026 - +SPOUT methyltransferase family protein%3B crystal structure shows homodimer%3B in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA 33691 34170 + 159 - - SAOUHSC_00027 SAOUHSC_00027 - +- 34375 34509 - 44 - - SAOUHSC_00028 SAOUHSC_00028 - +conserved hypothetical protein 34473 34565 + 30 - - SAOUHSC_00029 SAOUHSC_00029 - +conserved hypothetical protein 34712 36457 + 581 - - SAOUHSC_00030 SAOUHSC_00030 - +conserved hypothetical protein 36551 37003 - 150 - - SAOUHSC_00031 SAOUHSC_00031 - +conserved hypothetical protein 37019 37120 - 33 - - SAOUHSC_00032 SAOUHSC_00032 - +conserved hypothetical protein 37218 37973 - 251 - - SAOUHSC_00033 SAOUHSC_00033 - +conserved hypothetical protein 37973 38233 - 86 - - SAOUHSC_00034 SAOUHSC_00034 - +conserved hypothetical protein 38370 39437 + 355 - - SAOUHSC_00035 SAOUHSC_00035 - +conserved hypothetical protein 39468 40802 + 444 - - SAOUHSC_00036 SAOUHSC_00036 - +conserved hypothetical protein 40821 42014 + 397 - - SAOUHSC_00037 SAOUHSC_00037 - +conserved hypothetical protein 42281 42382 - 33 - - SAOUHSC_00038 SAOUHSC_00038 - +conserved hypothetical protein 42681 43613 - 310 - - SAOUHSC_00039 SAOUHSC_00039 - +conserved hypothetical protein 43976 44179 + 67 - - SAOUHSC_00040 SAOUHSC_00040 - +conserved hypothetical protein 44228 44524 + 98 - - SAOUHSC_00041 SAOUHSC_00041 - +conserved hypothetical protein 44596 45816 - 406 - - SAOUHSC_00042 SAOUHSC_00042 - +conserved hypothetical protein 45809 46360 - 183 - - SAOUHSC_00043 SAOUHSC_00043 - +conserved hypothetical protein 46473 47333 + 286 - - SAOUHSC_00044 SAOUHSC_00044 - +conserved hypothetical protein 47689 48222 - 177 - - SAOUHSC_00045 SAOUHSC_00045 - +conserved hypothetical protein 48313 49056 + 247 - - SAOUHSC_00046 SAOUHSC_00046 - +conserved hypothetical protein 49490 50092 + 200 - - SAOUHSC_00047 SAOUHSC_00047 - +conserved hypothetical protein 50359 53511 + 1050 - - SAOUHSC_00049 SAOUHSC_00049 - +conserved hypothetical protein 53568 54050 + 160 - - SAOUHSC_00050 SAOUHSC_00050 - +1-phosphatidylinositol phosphodiesterase precursor%2C putative 54255 55241 + 328 - - SAOUHSC_00051 SAOUHSC_00051 - +conserved hypothetical protein 55462 56232 + 256 - - SAOUHSC_00052 SAOUHSC_00052 - +conserved hypothetical protein 56284 57054 + 256 - - SAOUHSC_00053 SAOUHSC_00053 - +conserved hypothetical protein 57118 57888 + 256 - - SAOUHSC_00054 SAOUHSC_00054 - +conserved hypothetical protein 57955 58722 + 255 - - SAOUHSC_00055 SAOUHSC_00055 - +conserved hypothetical protein 58855 61053 + 732 - - SAOUHSC_00056 SAOUHSC_00056 - +conserved hypothetical protein 61204 62382 + 392 - - SAOUHSC_00057 SAOUHSC_00057 - +conserved hypothetical protein 62384 63772 + 462 - - SAOUHSC_00058 SAOUHSC_00058 - +conserved hypothetical protein 64265 65926 - 553 - - SAOUHSC_00060 SAOUHSC_00060 - +in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever 66252 68027 - 591 - - SAOUHSC_00061 SAOUHSC_00061 - +conserved hypothetical protein 68201 69073 - 290 - - SAOUHSC_00062 SAOUHSC_00062 - +conserved hypothetical protein 69186 70583 + 465 - - SAOUHSC_00064 SAOUHSC_00064 - +conserved hypothetical protein 70773 71246 + 157 - - SAOUHSC_00065 SAOUHSC_00065 - +L-lactate permease 71508 73100 + 530 - - SAOUHSC_00067 SAOUHSC_00067 - +protein A 73429 74979 - 516 - - SAOUHSC_00069 SAOUHSC_00069 - +staphylococcal accessory regulator-like protein 75400 76152 - 250 - - SAOUHSC_00070 SAOUHSC_00070 - +lipoprotein%2C SirC%2C putative 76521 77435 - 304 - - SAOUHSC_00071 SAOUHSC_00071 - +lipoprotein%2C SirB%2C putative 77516 78511 - 331 - - SAOUHSC_00072 SAOUHSC_00072 - +periplasmic binding protein%2C putative 78527 79519 - 330 - - SAOUHSC_00074 SAOUHSC_00074 - +conserved hypothetical protein 79885 80730 + 281 - - SAOUHSC_00075 SAOUHSC_00075 - +ornithine cyclodeaminase%2C putative 80727 81737 + 336 - - SAOUHSC_00076 SAOUHSC_00076 - +conserved hypothetical protein 81758 83512 + 584 - - SAOUHSC_00077 SAOUHSC_00077 - +conserved hypothetical protein 83505 84761 + 418 - - SAOUHSC_00078 SAOUHSC_00078 - +conserved hypothetical protein 84751 86487 + 578 - - SAOUHSC_00079 SAOUHSC_00079 - +conserved hypothetical protein 86396 88246 + 616 - - SAOUHSC_00080 SAOUHSC_00080 - +conserved hypothetical protein 88221 88997 + 258 - - SAOUHSC_00081 SAOUHSC_00081 - +conserved hypothetical protein 88997 90199 + 400 - - SAOUHSC_00082 SAOUHSC_00082 - +conserved hypothetical protein 90203 90967 + 254 - - SAOUHSC_00083 SAOUHSC_00083 - +conserved hypothetical protein 91163 91570 + 135 - - SAOUHSC_00084 SAOUHSC_00084 - +conserved hypothetical protein 91620 92246 + 208 - - SAOUHSC_00085 SAOUHSC_00085 - +3-ketoacyl-acyl carrier protein reductase%2C putative 92458 93234 + 258 - - SAOUHSC_00086 SAOUHSC_00086 - +conserved hypothetical protein 93378 93500 + 40 - - SAOUHSC_00087 SAOUHSC_00087 - +conserved hypothetical protein 93570 94550 + 326 - - SAOUHSC_00088 SAOUHSC_00088 - +conserved hypothetical protein 94513 95205 + 230 - - SAOUHSC_00089 SAOUHSC_00089 - +conserved hypothetical protein 95415 96581 + 388 - - SAOUHSC_00090 SAOUHSC_00090 - +conserved hypothetical protein 96562 97800 + 412 - - SAOUHSC_00091 SAOUHSC_00091 - +conserved hypothetical protein 97790 99220 + 476 - - SAOUHSC_00092 SAOUHSC_00092 - +superoxide dismutase%2C putative 99488 100087 + 199 - - SAOUHSC_00093 SAOUHSC_00093 - +conserved hypothetical protein 100455 101054 + 199 - - SAOUHSC_00094 SAOUHSC_00094 - +transcriptional regulator%2C GntR family%2C putative 101370 102125 - 251 - - SAOUHSC_00096 SAOUHSC_00096 - +catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate 102361 103068 + 235 - - SAOUHSC_00097 SAOUHSC_00097 - +conserved hypothetical protein 103075 104427 + 450 - - SAOUHSC_00099 SAOUHSC_00099 - +catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate 104508 105170 + 220 - - SAOUHSC_00100 SAOUHSC_00100 - +catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose 105198 106376 + 392 - - SAOUHSC_00101 SAOUHSC_00101 - +phosphonates ABC transporter%2C permease protein CC0363%2C putative 106507 107322 - 271 - - SAOUHSC_00102 SAOUHSC_00102 - +phosphonates ABC transporter%2C permease protein CC0363%2C putative 107319 108119 - 266 - - SAOUHSC_00103 SAOUHSC_00103 - +amino acid ABC transporter%2C ATP-binding protein%2C putative 108121 108894 - 257 - - SAOUHSC_00104 SAOUHSC_00104 - +phosphonate ABC transporter%2C substrate-binding protein%2C putative 109108 110064 - 318 - - SAOUHSC_00105 SAOUHSC_00105 - +conserved hypothetical protein 110293 111837 + 514 - - SAOUHSC_00106 SAOUHSC_00106 - +conserved hypothetical protein 111888 113423 + 511 - - SAOUHSC_00107 SAOUHSC_00107 - +conserved hypothetical protein 113507 113710 + 67 - - SAOUHSC_00108 SAOUHSC_00108 - +replication initiation protein%2C putative 114083 114568 + 161 - - SAOUHSC_00109 SAOUHSC_00109 - +- 114927 115214 + 95 - - SAOUHSC_00111 SAOUHSC_00111 - +alcohol dehydrogenase%2C iron-containing%2C putative 116538 119147 + 869 - - SAOUHSC_00113 SAOUHSC_00113 - +capsular polysaccharide biosynthesis protein%2C putative 119492 120160 + 222 - - SAOUHSC_00114 SAOUHSC_00114 - +capsular polysaccharide synthesis enzyme Cap5B 120176 120862 + 228 - - SAOUHSC_00115 SAOUHSC_00115 - +capsular polysaccharide synthesis enzyme Cap8C 120865 121629 + 254 - - SAOUHSC_00116 SAOUHSC_00116 - +capsular polysaccharide biosynthesis protein Cap5D%2C putative 121649 123472 + 607 - - SAOUHSC_00117 SAOUHSC_00117 - +capsular polysaccharide biosynthesis protein Cap5E%2C putative 123462 124490 + 342 - - SAOUHSC_00118 SAOUHSC_00118 - +capsular polysaccharide synthesis enzyme Cap8F 124503 125612 + 369 - - SAOUHSC_00119 SAOUHSC_00119 - +UDP-N-acetylglucosamine 2-epimerase 125616 126740 + 374 - - SAOUHSC_00120 SAOUHSC_00120 - +capsular polysaccharide synthesis enzyme O-acetyl transferase Cap5H%2C putative 126743 127369 + 208 - - SAOUHSC_00121 SAOUHSC_00121 - +capsular polysaccharide biosynthesis protein Cap5I%2C putative 127374 128483 + 369 - - SAOUHSC_00122 SAOUHSC_00122 - +capsular polysaccharide biosynthesis protein Cap5J%2C putative 128497 129663 + 388 - - SAOUHSC_00123 SAOUHSC_00123 - +capsular polysaccharide biosynthesis protein Cap5K%2C putative 129656 130861 + 401 - - SAOUHSC_00124 SAOUHSC_00124 - +cap5L protein/glycosyltransferase%2C putative 130862 132067 + 401 - - SAOUHSC_00125 SAOUHSC_00125 - +capsular polysaccharide biosynthesis protein Cap8M 132078 132635 + 185 - - SAOUHSC_00126 SAOUHSC_00126 - +cap5N protein/UDP-glucose 4-epimerase%2C putative 132635 133522 + 295 - - SAOUHSC_00127 SAOUHSC_00127 - +cap5O protein/UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase 133576 134838 + 420 - - SAOUHSC_00128 SAOUHSC_00128 - +UDP-N-acetylglucosamine 2-epimerase 134915 136060 + 381 - - SAOUHSC_00129 SAOUHSC_00129 - +iron regulated%3B catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source 136125 136451 - 108 - - SAOUHSC_00130 SAOUHSC_00130 - +conserved hypothetical protein 136458 136841 - 127 - - SAOUHSC_00131 SAOUHSC_00131 - +aldehyde dehydrogenase%2C putative 137268 138755 + 495 - - SAOUHSC_00132 SAOUHSC_00132 - +conserved hypothetical protein 139401 140360 + 319 - - SAOUHSC_00133 SAOUHSC_00133 - +conserved hypothetical protein 140422 140625 - 67 - - SAOUHSC_00134 SAOUHSC_00134 - +conserved hypothetical protein 140804 141316 + 170 - - SAOUHSC_00135 SAOUHSC_00135 - +conserved hypothetical protein 141658 142398 + 246 - - SAOUHSC_00136 SAOUHSC_00136 - +conserved hypothetical protein 142412 143386 + 324 - - SAOUHSC_00137 SAOUHSC_00137 - +conserved hypothetical protein 143383 144144 + 253 - - SAOUHSC_00138 SAOUHSC_00138 - +conserved hypothetical protein 144157 145188 + 343 - - SAOUHSC_00139 SAOUHSC_00139 - +conserved hypothetical protein 145405 145764 + 119 - - SAOUHSC_00141 SAOUHSC_00141 - +Catalyzes the reversible two-electron oxidation of formate to carbon dioxide. It allows the assimilation of carbon dioxide and provides energy for growth through oxidative phosphorylation coupled to the reduction of oxygen%2C nitrate%2C sulphate or fumarate 145937 146962 + 341 - - SAOUHSC_00142 SAOUHSC_00142 - +conserved hypothetical protein 147348 148598 + 416 - - SAOUHSC_00143 SAOUHSC_00143 - +conserved hypothetical protein 149045 156220 + 2391 - - SAOUHSC_00144 SAOUHSC_00144 - +conserved hypothetical protein 156233 156877 + 214 - - SAOUHSC_00145 SAOUHSC_00145 - +conserved hypothetical protein 157205 157684 - 159 - - SAOUHSC_00146 SAOUHSC_00146 - +acetylglutamate kinase%2C putative 157954 158718 - 254 - - SAOUHSC_00147 SAOUHSC_00147 - +bifunctional arginine biosynthesis protein ArgJ%3B functions at the 1st and 5th steps in arginine biosynthesis%3B involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate 158734 159975 - 413 - - argJ SAOUHSC_00148 - +catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis%3B involved in both the arginine and lysine biosynthetic pathways%3B lysine is produced via the AAA pathway%2C lysine from alpha-aminoadipate 159987 161018 - 343 - - argC SAOUHSC_00149 - +ornithine aminotransferase%2C putative 161057 162241 - 394 - - SAOUHSC_00150 SAOUHSC_00150 - +branched-chain amino acid transport system II carrier protein 162494 163849 - 451 - - SAOUHSC_00151 SAOUHSC_00151 - +conserved hypothetical protein 164125 164622 - 165 - - SAOUHSC_00152 SAOUHSC_00152 - +indolepyruvate decarboxylase%2C putative 164749 166389 - 546 - - SAOUHSC_00153 SAOUHSC_00153 - +conserved hypothetical protein 166583 166684 + 33 - - SAOUHSC_00154 SAOUHSC_00154 - +PTS system%2C glucose-specific component 166663 168660 - 665 - - SAOUHSC_00155 SAOUHSC_00155 - +conserved hypothetical protein 169309 170349 + 346 - - SAOUHSC_00156 SAOUHSC_00156 - +catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate%3B involved in MurNAc dissimilation pathway 170349 171245 + 298 - - murQ SAOUHSC_00157 - +PTS system component 171257 172711 + 484 - - SAOUHSC_00158 SAOUHSC_00158 - +conserved hypothetical protein 172714 173589 + 291 - - SAOUHSC_00160 SAOUHSC_00160 - +conserved hypothetical protein 173783 174064 - 93 - - SAOUHSC_00161 SAOUHSC_00161 - +type I site-specific deoxyribonuclease%2C HsdR family%2C putative 174277 177066 + 929 - - SAOUHSC_00162 SAOUHSC_00162 - +conserved hypothetical protein 177271 178113 + 280 - - SAOUHSC_00163 SAOUHSC_00163 - +conserved hypothetical protein 178115 179038 + 307 - - SAOUHSC_00164 SAOUHSC_00164 - +conserved hypothetical protein 179025 180137 + 370 - - SAOUHSC_00166 SAOUHSC_00166 - +peptide ABC transporter%2C ATP-binding protein%2C putative 180402 181994 - 530 - - SAOUHSC_00167 SAOUHSC_00167 - +conserved hypothetical protein 181951 183429 + 492 - - SAOUHSC_00168 SAOUHSC_00168 - +peptide ABC transporter%2C permease protein%2C putative 183435 184598 + 387 - - SAOUHSC_00169 SAOUHSC_00169 - +conserved hypothetical protein 184615 186390 + 591 - - SAOUHSC_00170 SAOUHSC_00170 - +gamma-glutamyltranspeptidase%2C putative 186428 188434 + 668 - - SAOUHSC_00171 SAOUHSC_00171 - +conserved hypothetical protein 188732 189505 - 257 - - SAOUHSC_00172 SAOUHSC_00172 - +FMN-dependent%3B requires NADH%3B catalyzes the cleavage of azo bond in aromatic azo compounds 189695 190321 - 208 - - SAOUHSC_00173 SAOUHSC_00173 - +M23/M37 peptidase domain protein 190530 191108 + 192 - - SAOUHSC_00174 SAOUHSC_00174 - +multiple sugar-binding transport ATP-binding protein%2C putative 191491 192588 + 365 - - SAOUHSC_00175 SAOUHSC_00175 - +bacterial extracellular solute-binding protein%2C putative 192601 193872 + 423 - - SAOUHSC_00176 SAOUHSC_00176 - +maltose ABC transporter%2C permease protein%2C putative 193875 195143 + 422 - - SAOUHSC_00177 SAOUHSC_00177 - +maltose ABC transporter%2C permease protein 195145 195984 + 279 - - SAOUHSC_00178 SAOUHSC_00178 - +conserved hypothetical protein 196058 197134 + 358 - - SAOUHSC_00179 SAOUHSC_00179 - +conserved hypothetical protein 197159 198199 + 346 - - SAOUHSC_00180 SAOUHSC_00180 - +conserved hypothetical protein 198254 199222 + 322 - - SAOUHSC_00181 SAOUHSC_00181 - +conserved hypothetical protein 199583 200155 - 190 - - SAOUHSC_00182 SAOUHSC_00182 - +cytoplasmic membrane protein that functions as a monomer%3B catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate 200310 201689 + 459 - - uhpT SAOUHSC_00183 - +Response regulator receiver domain protein 202048 202806 - 252 - - SAOUHSC_00184 SAOUHSC_00184 - +conserved hypothetical protein 202799 204355 - 518 - - SAOUHSC_00185 SAOUHSC_00185 - +lipoprotein%2C putative 204352 205320 - 322 - - SAOUHSC_00186 SAOUHSC_00186 - +formate acetyltransferase 205908 208157 + 749 - - SAOUHSC_00187 SAOUHSC_00187 - +pyruvate formate-lyase 1 activating enzyme%2C putative 208180 208935 + 251 - - SAOUHSC_00188 SAOUHSC_00188 - +conserved hypothetical protein 209271 211034 + 587 - - SAOUHSC_00190 SAOUHSC_00190 - +conserved hypothetical protein 211198 211542 - 114 - - SAOUHSC_00191 SAOUHSC_00191 - +coagulase 211732 213642 + 636 - - SAOUHSC_00192 SAOUHSC_00192 - +- 213824 213931 - 35 - - SAOUHSC_00193 SAOUHSC_00193 - +acetyl-CoA acetyltransferase%2C putative 214246 215430 - 394 - - SAOUHSC_00195 SAOUHSC_00195 - +conserved hypothetical protein 215460 217721 - 753 - - SAOUHSC_00196 SAOUHSC_00196 - +conserved hypothetical protein 217907 219118 - 403 - - SAOUHSC_00197 SAOUHSC_00197 - +conserved hypothetical protein 219230 220735 - 501 - - SAOUHSC_00198 SAOUHSC_00198 - +conserved hypothetical protein 220761 222338 - 525 - - SAOUHSC_00199 SAOUHSC_00199 - +membrane protein%2C putative 222779 223921 + 380 - - SAOUHSC_00200 SAOUHSC_00200 - +conserved hypothetical protein 224235 225647 - 470 - - SAOUHSC_00201 SAOUHSC_00201 - +conserved hypothetical protein 225908 226264 - 118 - - SAOUHSC_00202 SAOUHSC_00202 - +conserved hypothetical protein 226421 226594 - 57 - - SAOUHSC_00203 SAOUHSC_00203 - +Globin domain protein 226620 227765 - 381 - - SAOUHSC_00204 SAOUHSC_00204 - +- 227920 228027 + 35 - - SAOUHSC_00205 SAOUHSC_00205 - +L-lactate dehydrogenase 228482 229291 + 269 - - SAOUHSC_00206 SAOUHSC_00206 - +- 229502 229645 + 47 - - SAOUHSC_00208 SAOUHSC_00208 - +PTS system%2C glucose-specific IIBC component%2C putative 229611 231140 - 509 - - SAOUHSC_00209 SAOUHSC_00209 - +conserved hypothetical protein 231502 232437 + 311 - - SAOUHSC_00211 SAOUHSC_00211 - +conserved hypothetical protein 232547 232645 + 32 - - SAOUHSC_00212 SAOUHSC_00212 - +conserved hypothetical protein 232776 234872 + 698 - - SAOUHSC_00213 SAOUHSC_00213 - +phosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 2%2C putative 234857 235324 + 155 - - SAOUHSC_00214 SAOUHSC_00214 - +PTS system component%2C putative 235347 235625 + 92 - - SAOUHSC_00215 SAOUHSC_00215 - +PTS system component 235852 237111 + 419 - - SAOUHSC_00216 SAOUHSC_00216 - +sorbitol dehydrogenase%2C putative 237129 238184 + 351 - - SAOUHSC_00217 SAOUHSC_00217 - +conserved hypothetical protein 238186 238332 + 48 - - SAOUHSC_00218 SAOUHSC_00218 - +conserved hypothetical protein 238356 239399 + 347 - - SAOUHSC_00219 SAOUHSC_00219 - +4-diphosphocytidyl-2C-methyl-D-erythritol synthase%3B MEP cytidylyltransferase%3B MCT%3B catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate%3B involved in isoprenoid and isopentenyl-PP biosynthesis%3B forms homodimers 239969 240643 + 224 - - SAOUHSC_00220 SAOUHSC_00220 - +alcohol dehydrogenase%2C zinc-containing 240636 241661 + 341 - - SAOUHSC_00221 SAOUHSC_00221 - +tagB protein%2C putative 241836 243377 + 513 - - SAOUHSC_00222 SAOUHSC_00222 - +teichoic acid biosynthesis protein F%2C putative 243805 244974 + 389 - - SAOUHSC_00223 SAOUHSC_00223 - +4-diphosphocytidyl-2C-methyl-D-erythritol synthase%3B MEP cytidylyltransferase%3B MCT%3B catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate%3B involved in isoprenoid and isopentenyl-PP biosynthesis%3B forms homodimers 245250 245966 + 238 - - ispD SAOUHSC_00225 - +conserved hypothetical protein 245959 246984 + 341 - - SAOUHSC_00226 SAOUHSC_00226 - +conserved hypothetical protein 247006 248694 + 562 - - SAOUHSC_00227 SAOUHSC_00227 - +conserved hypothetical protein 248727 250451 + 574 - - SAOUHSC_00228 SAOUHSC_00228 - +involved in peptidoglycan cross-linking 250591 251265 + 224 - - SAOUHSC_00229 SAOUHSC_00229 - +two-component sensor histidine kinase%2C putative 251527 253266 + 579 - - SAOUHSC_00230 SAOUHSC_00230 - +two-component response regulator%2C putative 253269 254009 + 246 - - SAOUHSC_00231 SAOUHSC_00231 - +negatively regulates murein hydrolase activity 254122 254565 + 147 - - SAOUHSC_00232 SAOUHSC_00232 - +in conjunction with LrgA this protein inhibits the expression or activity of extracellular murein hydrolases 254558 255259 + 233 - - SAOUHSC_00233 SAOUHSC_00233 - +conserved hypothetical protein 255367 256071 - 234 - - SAOUHSC_00234 SAOUHSC_00234 - +conserved hypothetical protein 256220 257011 + 263 - - SAOUHSC_00235 SAOUHSC_00235 - +6-phospho-beta-glucosidase%2C putative 257027 258463 + 478 - - SAOUHSC_00236 SAOUHSC_00236 - +conserved hypothetical protein 258896 259657 - 253 - - SAOUHSC_00237 SAOUHSC_00237 - +- 259676 259810 + 44 - - SAOUHSC_00238 SAOUHSC_00238 - +ribokinase%2C putative 259908 260822 - 304 - - SAOUHSC_00239 SAOUHSC_00239 - +cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose%3B RbsD is required for efficient ribose utilization in E. coli%3B rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source 260850 261254 - 134 - - SAOUHSC_00240 SAOUHSC_00240 - +conserved hypothetical protein 261269 262150 - 293 - - SAOUHSC_00241 SAOUHSC_00241 - +conserved hypothetical protein 262382 263380 - 332 - - SAOUHSC_00242 SAOUHSC_00242 - +NADH dehydrogenase subunit%2C putative 263531 263710 + 59 - - SAOUHSC_00243 SAOUHSC_00243 - +conserved hypothetical protein 263760 264152 + 130 - - SAOUHSC_00244 SAOUHSC_00244 - +drug transporter%2C putative 264825 266201 - 458 - - SAOUHSC_00246 SAOUHSC_00246 - +conserved hypothetical protein 266435 267427 + 330 - - SAOUHSC_00247 SAOUHSC_00247 - +peptidoglycan hydrolase%2C putative 267753 268703 + 316 - - SAOUHSC_00248 SAOUHSC_00248 - +conserved hypothetical protein 268755 269414 - 219 - - SAOUHSC_00249 SAOUHSC_00249 - +conserved hypothetical protein 269428 270348 - 306 - - SAOUHSC_00250 SAOUHSC_00250 - +conserved hypothetical protein 270345 271511 - 388 - - SAOUHSC_00251 SAOUHSC_00251 - +conserved hypothetical protein 271579 273102 - 507 - - SAOUHSC_00253 SAOUHSC_00253 - +conserved hypothetical protein 273373 274026 + 217 - - SAOUHSC_00254 SAOUHSC_00254 - +conserved hypothetical protein 274060 274647 + 195 - - SAOUHSC_00255 SAOUHSC_00255 - +conserved hypothetical protein 274790 275683 - 297 - - SAOUHSC_00256 SAOUHSC_00256 - +conserved hypothetical protein 275931 276224 + 97 - - SAOUHSC_00257 SAOUHSC_00257 - +conserved hypothetical protein 276308 279337 + 1009 - - SAOUHSC_00258 SAOUHSC_00258 - +conserved hypothetical protein 279337 279795 + 152 - - SAOUHSC_00259 SAOUHSC_00259 - +conserved hypothetical protein 279728 280009 + 93 - - SAOUHSC_00260 SAOUHSC_00260 - +conserved hypothetical protein 280022 281356 + 444 - - SAOUHSC_00261 SAOUHSC_00261 - +conserved hypothetical protein 281378 285817 + 1479 - - SAOUHSC_00262 SAOUHSC_00262 - +conserved hypothetical protein 285847 286239 + 130 - - SAOUHSC_00264 SAOUHSC_00264 - +conserved hypothetical protein 286255 286569 + 104 - - SAOUHSC_00265 SAOUHSC_00265 - +conserved hypothetical protein 286569 287243 + 224 - - SAOUHSC_00266 SAOUHSC_00266 - +conserved hypothetical protein 287243 287560 + 105 - - SAOUHSC_00267 SAOUHSC_00267 - +- 287570 289414 + 614 - - SAOUHSC_00268 SAOUHSC_00268 -