Mercurial > repos > iuc > trinity

comparison abundance_estimates_to_matrix.xml @ 3:c7555bc21812 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit bbfd77c34b609b86ef3a24525dae1127d8b3d99b
author iuc
date Tue, 03 May 2016 10:54:25 -0400
parents de0af39266ef
children e4a9e0798360
comparison
equal deleted inserted replaced
2:de0af39266ef 3:c7555bc21812
24 #for $entry in $samples: 24 #for $entry in $samples:
25 "${entry.sample_name}.tsv" 25 "${entry.sample_name}.tsv"
26 #end for 26 #end for
27 ]]></command> 27 ]]></command>
28 <inputs> 28 <inputs>
29 <repeat name="samples" title="RSEM abundance estimates for samples"> 29 <repeat name="samples" title="Abundance estimates for samples">
30 <param name="file" label="Add file" type="data" format="tabular"/> 30 <param name="file" label="Add file" type="data" format="tabular"/>
31 <param name="sample_name" label="Sample name" type="text"> 31 <param name="sample_name" label="Sample name" type="text">
32 <validator type="regex" message="Value must be a not empty string composed by alphanumeric characters and underscores">^\w+$</validator> 32 <validator type="regex" message="Value must be a not empty string composed by alphanumeric characters and underscores">^\w+$</validator>
33 </param> 33 </param>
34 </repeat> 34 </repeat>
35 35
36 <param type="select" name="est_method" label="Abundance estimation method"> 36 <param type="select" name="est_method" label="Abundance estimation method">
37 <option value="RSEM">RSEM</option> 37 <option value="RSEM">RSEM</option>
38 <option value="eXpress">eXpress</option> 38 <option value="eXpress">eXpress</option>
39 </param> 39 </param>
40 40
196 196
197 197
198 .. _Trinity: http://trinityrnaseq.github.io 198 .. _Trinity: http://trinityrnaseq.github.io
199 ]]> 199 ]]>
200 </help> 200 </help>
201 201
202 <citations> 202 <citations>
203 <citation type="doi">doi:10.1038/nbt.1883</citation> 203 <citation type="doi">doi:10.1038/nbt.1883</citation>
204 </citations> 204 </citations>
205 </tool> 205 </tool>
206 206