Mercurial > repos > iuc > trinity

comparison tool_dependencies.xml @ 3:c7555bc21812 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit bbfd77c34b609b86ef3a24525dae1127d8b3d99b
author iuc
date Tue, 03 May 2016 10:54:25 -0400
parents de0af39266ef
children 692491de7df5
comparison
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2:de0af39266ef 3:c7555bc21812
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="trinity" version="2.1.1"> 3 <package name="trinity" version="2.1.1">
4 <repository changeset_revision="b66b28a11557" name="package_trinity_2_1_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="f75117647d9c" name="package_trinity_2_1_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="bowtie" version="1.1.2"> 6 <package name="bowtie" version="1.1.2">
7 <repository changeset_revision="a1c1a92e13a6" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="a1c1a92e13a6" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="bowtie2" version="2.2.6"> 9 <package name="bowtie2" version="2.2.6">
23 </package> 23 </package>
24 <package name="limma" version="3.27.4"> 24 <package name="limma" version="3.27.4">
25 <repository changeset_revision="7c305aa20292" name="package_r_limma_3_27_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> 25 <repository changeset_revision="7c305aa20292" name="package_r_limma_3_27_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
26 </package> 26 </package>
27 <package name="deseq2" version="1.10.0"> 27 <package name="deseq2" version="1.10.0">
28 <repository changeset_revision="362a2224b1d2" name="package_deseq2_1_10_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> 28 <repository changeset_revision="56a98b4043fd" name="package_deseq2_1_10_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
29 </package> 29 </package>
30 <set_environment version="1.0"> 30 <set_environment version="1.0">
31 <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">--max_memory 30G --bflyHeapSpaceMax 30G</environment_variable> 31 <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">--max_memory 30G --bflyHeapSpaceMax 30G</environment_variable>
32 </set_environment> 32 </set_environment>
33 </tool_dependency> 33 </tool_dependency>