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view tool_dependencies.xml @ 6:f7564c3f9dc0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 8d669640b96f75d4accdb4f6445ea6cff9f722aa-dirty
author iuc
date Wed, 08 Jun 2016 06:49:31 -0400
parents e4a9e0798360
children 1b7800489efb
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<?xml version="1.0"?>
<tool_dependency>
    <package name="trinity" version="2.1.1">
        <repository changeset_revision="7a745f45e753" name="package_trinity_2_1_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="bowtie" version="1.1.2">
        <repository changeset_revision="a1c1a92e13a6" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="bowtie2" version="2.2.6">
        <repository changeset_revision="0d9cd7487cc9" name="package_bowtie_2_2_6" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="samtools" version="1.2">
        <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="edger" version="3.12.0">
        <repository changeset_revision="bb14bf1e4535" name="package_r_edger_3_12_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="rsem" version="1.2.28">
        <repository changeset_revision="4567331d510a" name="package_rsem_1_2_28" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="express" version="1.5.1">
        <repository changeset_revision="93017e8743e5" name="package_express_1_5_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="limma" version="3.28.2">
        <repository changeset_revision="4fa8ed0ffea1" name="package_r_limma_3_28_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="deseq2" version="1.10.0">
       <repository changeset_revision="e4a11a7d33d6" name="package_deseq2_1_10_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <set_environment version="1.0">
        <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">--max_memory 30G --bflyHeapSpaceMax 30G</environment_variable>
    </set_environment>
</tool_dependency>