Mercurial > repos > iuc > trinity
changeset 9:8bd817614cc8 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit acdc3dfe5fd6317ae57899aa0e83130dff7460e7
| author | iuc |
|---|---|
| date | Tue, 12 Jul 2016 11:36:37 -0400 |
| parents | 258c64019e50 |
| children | 831abd20e690 |
| files | align_and_estimate_abundance.xml tool_dependencies.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/align_and_estimate_abundance.xml Tue Jun 28 12:22:40 2016 -0400 +++ b/align_and_estimate_abundance.xml Tue Jul 12 11:36:37 2016 -0400 @@ -38,6 +38,8 @@ --SS_lib_type $inputs.strand.library_type #end if + --max_ins_size $inputs.paired_fragment_length + #else: --single $inputs.input @@ -52,8 +54,6 @@ #end if #end if - --max_ins_size $inputs.paired_fragment_length - ## Additional parameters. #if $additional_params.gene_map.has_gene_map == "no": --gene_trans_map $additional_params.gene_map.gene_trans_map
--- a/tool_dependencies.xml Tue Jun 28 12:22:40 2016 -0400 +++ b/tool_dependencies.xml Tue Jul 12 11:36:37 2016 -0400 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <tool_dependency> <package name="trinity" version="2.1.1"> - <repository changeset_revision="cec8b7f159c5" name="package_trinity_2_1_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="1585b0b46b84" name="package_trinity_2_1_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="bowtie" version="1.1.2"> <repository changeset_revision="a1c1a92e13a6" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />