# HG changeset patch
# User iuc
# Date 1535043362 14400
# Node ID 0f445c315a0858ddaace7ae430773e5ad0948c3c
# Parent  13ab393ba7948ff8fe340b4f9c4e0ee0cfe9a663
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 482fb46ba8d588f2294e21829a0904809b0ec3f1

diff -r 13ab393ba794 -r 0f445c315a08 abundance_estimates_to_matrix.xml
--- a/abundance_estimates_to_matrix.xml	Thu Jun 14 03:12:12 2018 -0400
+++ b/abundance_estimates_to_matrix.xml	Thu Aug 23 12:56:02 2018 -0400
@@ -5,7 +5,6 @@
     </macros>
     <expand macro="requirements">
         <requirement type="package" version="3.20.7">bioconductor-edger</requirement>
-        <requirement type="package" version="0.9.1">salmon</requirement>
         <requirement type="package" version="0.44.0">kallisto</requirement>
     </expand>
     <command detect_errors="aggressive"><![CDATA[
diff -r 13ab393ba794 -r 0f445c315a08 macros.xml
--- a/macros.xml	Thu Jun 14 03:12:12 2018 -0400
+++ b/macros.xml	Thu Aug 23 12:56:02 2018 -0400
@@ -2,12 +2,12 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="2.6.6">trinity</requirement>
+            <requirement type="package" version="@WRAPPER_VERSION@">trinity</requirement>
             <yield/>
         </requirements>
     </xml>
 
-    <token name="@WRAPPER_VERSION@">2.6.6</token>
+    <token name="@WRAPPER_VERSION@">2.8.3</token>
 
     <token name="@COMMAND_PAIRED_STRAND_JACCARD@">
         #if $pool.inputs.strand.is_strand_specific:
@@ -28,7 +28,7 @@
                 </param>
             </when>
         </conditional>
-        <param name="jaccard_clip" argument="--jaccard_clip" type="boolean" truevalue="--jaccard_clip" falsevalue="" checked="false" label="Jaccard Clip options" help="Set if you expect high gene density with UTR overlap"/>
+        <param argument="--jaccard_clip" type="boolean" truevalue="--jaccard_clip" falsevalue="" checked="false" label="Jaccard Clip options" help="Set if you expect high gene density with UTR overlap"/>
     </xml>
 
     <xml name="citation">