Mercurial > repos > iuc > trinity_align_and_estimate_abundance

annotate macros.xml @ 19:c2b82a94493e draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1b2ce625fad2514549bf2a675c26517c3d46ed81"
author iuc
date Sun, 19 Dec 2021 16:23:51 +0000
parents 6c20d62180af
children 75f4e1859ed7
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a21e229da9a1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit e23a8ad798830209db722d5496d19ec7a5e06214
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1 <?xml version="1.0"?>
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2 <macros>
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3 <xml name="requirements">
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4 <requirements>
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5 <requirement type="package" version="@WRAPPER_VERSION@">trinity</requirement>
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6 <yield/>
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7 </requirements>
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8 </xml>
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9 <xml name="bio_tools">
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10 <xrefs>
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11 <xref type="bio.tools">trinity</xref>
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12 </xrefs>
6c20d62180af "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 33aaad8d6afce20732d8232fbcd777a3aabf09ec"
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13 </xml>
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56162e446004 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit f5736e63d4d4210c33eea4a1985508466c3c168d"
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14 <token name="@WRAPPER_VERSION@">2.9.1</token>
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15
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16 <token name="@COMMAND_PAIRED_STRAND_JACCARD@">
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17 #if $pool.inputs.strand.is_strand_specific:
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18 --SS_lib_type $pool.inputs.strand.library_type
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19 #end if
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20
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21 $pool.inputs.jaccard_clip
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22 </token>
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24 <xml name="input_paired_strand_jaccard">
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25 <conditional name="strand">
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26 <param name="is_strand_specific" type="boolean" checked="false" label="Strand specific data"/>
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27 <when value="false" />
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28 <when value="true">
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29 <param name="library_type" argument="--SS_lib_type" type="select" label="Strand-specific library type">
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30 <option value="FR">Forward-Reverse</option>
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31 <option value="RF">Reverse-Forward</option>
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32 </param>
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33 </when>
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34 </conditional>
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35 <param argument="--jaccard_clip" type="boolean" truevalue="--jaccard_clip" falsevalue="" checked="false" label="Jaccard Clip options" help="Set if you expect high gene density with UTR overlap"/>
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36 </xml>
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37
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38 <xml name="citation">
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39 <citations>
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40 <citation type="doi">10.1038/nbt.1883</citation>
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41 </citations>
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42 </xml>
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43 </macros>