Mercurial > repos > iuc > trinity_align_and_estimate_abundance
comparison align_and_estimate_abundance.xml @ 7:3baf18bcf03e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 6d3a6d130b58b15190bf286b9840caa162a2bea1
author | iuc |
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date | Thu, 14 Dec 2017 10:22:11 -0500 |
parents | 04bd98a9c751 |
children | afd41a430a76 |
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6:04bd98a9c751 | 7:3baf18bcf03e |
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1 <tool id="trinity_align_and_estimate_abundance" name="Align reads and estimate abundance" version="@WRAPPER_VERSION@.2"> | 1 <tool id="trinity_align_and_estimate_abundance" name="Align reads and estimate abundance" version="@WRAPPER_VERSION@.3"> |
2 <description>on a de novo assembly of RNA-Seq data</description> | 2 <description>on a de novo assembly of RNA-Seq data</description> |
3 <macros> | 3 <macros> |
4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="requirements"> | 6 <expand macro="requirements"> |
7 <requirement type="package" version="1.3.0">rsem</requirement> | 7 <requirement type="package" version="1.3.0">rsem</requirement> |
8 <requirement type="package" version="1.5.1">express</requirement> | 8 <requirement type="package" version="1.5.1">express</requirement> |
9 <!-- Cannot update to salmon 0.8.2 because in Bioconda it requires icu 58, while r-base 3.3.1 requires icu 54 --> | 9 <requirement type="package" version="0.9.1">salmon</requirement> |
10 <requirement type="package" version="0.8.1">salmon</requirement> | |
11 <requirement type="package" version="0.43.1">kallisto</requirement> | 10 <requirement type="package" version="0.43.1">kallisto</requirement> |
12 </expand> | 11 </expand> |
13 <command detect_errors="aggressive"><![CDATA[ | 12 <command detect_errors="aggressive"><![CDATA[ |
14 ln -f -s '$transcripts' input.fa && | 13 ln -f -s '$transcripts' input.fa && |
15 | 14 |