Mercurial > repos > iuc > trinity_align_and_estimate_abundance

comparison align_and_estimate_abundance.xml @ 3:515119330a55 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit b9a2194247d728ef4d5a3c5511aa6ea63e9b2bcb
author iuc
date Tue, 13 Dec 2016 14:42:38 -0500
parents a966877db15b
children be3607a306af
comparison
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2:fba1f34838e6 3:515119330a55
1 <tool id="trinity_align_and_estimate_abundance" name="Align reads and estimate abundance" version="@WRAPPER_VERSION@.1"> 1 <tool id="trinity_align_and_estimate_abundance" name="Align reads and estimate abundance" version="@WRAPPER_VERSION@.2">
2 <description>on a de novo assembly of RNA-Seq data</description> 2 <description>on a de novo assembly of RNA-Seq data</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"> 6 <expand macro="requirements">
21 #else: 21 #else:
22 ln -s '$inputs.left_input' paired_left.fq && 22 ln -s '$inputs.left_input' paired_left.fq &&
23 ln -s '$inputs.right_input' paired_right.fq 23 ln -s '$inputs.right_input' paired_right.fq
24 #end if 24 #end if
25 #else: 25 #else:
26 #if $inputs.left_input.is_of_type('fasta'): 26 #if $inputs.input.is_of_type('fasta'):
27 ln -s '$inputs.input' single.fa 27 ln -s '$inputs.input' single.fa
28 #else: 28 #else:
29 ln -s '$inputs.input' single.fq 29 ln -s '$inputs.input' single.fq
30 #end if 30 #end if
31 #end if 31 #end if