Mercurial > repos > iuc > trinity_align_and_estimate_abundance

comparison macros.xml @ 11:aed859a021c0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 482fb46ba8d588f2294e21829a0904809b0ec3f1
author iuc
date Thu, 23 Aug 2018 12:54:49 -0400
parents afd41a430a76
children 478f36effca1
comparison
equal deleted inserted replaced
10:afd41a430a76 11:aed859a021c0
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <xml name="requirements"> 3 <xml name="requirements">
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.6.6">trinity</requirement> 5 <requirement type="package" version="@WRAPPER_VERSION@">trinity</requirement>
6 <yield/> 6 <yield/>
7 </requirements> 7 </requirements>
8 </xml> 8 </xml>
9 9
10 <token name="@WRAPPER_VERSION@">2.6.6</token> 10 <token name="@WRAPPER_VERSION@">2.8.3</token>
11 11
12 <token name="@COMMAND_PAIRED_STRAND_JACCARD@"> 12 <token name="@COMMAND_PAIRED_STRAND_JACCARD@">
13 #if $pool.inputs.strand.is_strand_specific: 13 #if $pool.inputs.strand.is_strand_specific:
14 --SS_lib_type $pool.inputs.strand.library_type 14 --SS_lib_type $pool.inputs.strand.library_type
15 #end if 15 #end if
26 <option value="FR">Forward-Reverse</option> 26 <option value="FR">Forward-Reverse</option>
27 <option value="RF">Reverse-Forward</option> 27 <option value="RF">Reverse-Forward</option>
28 </param> 28 </param>
29 </when> 29 </when>
30 </conditional> 30 </conditional>
31 <param name="jaccard_clip" argument="--jaccard_clip" type="boolean" truevalue="--jaccard_clip" falsevalue="" checked="false" label="Jaccard Clip options" help="Set if you expect high gene density with UTR overlap"/> 31 <param argument="--jaccard_clip" type="boolean" truevalue="--jaccard_clip" falsevalue="" checked="false" label="Jaccard Clip options" help="Set if you expect high gene density with UTR overlap"/>
32 </xml> 32 </xml>
33 33
34 <xml name="citation"> 34 <xml name="citation">
35 <citations> 35 <citations>
36 <citation type="doi">10.1038/nbt.1883</citation> 36 <citation type="doi">10.1038/nbt.1883</citation>