# HG changeset patch
# User iuc
# Date 1581441516 18000
# Node ID 56162e4460048a97487d76e7c397f9cfd61f4d57
# Parent  983552d5822d0aef0c78f5f64f998142198834bb
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit f5736e63d4d4210c33eea4a1985508466c3c168d"

diff -r 983552d5822d -r 56162e446004 align_and_estimate_abundance.xml
--- a/align_and_estimate_abundance.xml	Thu Nov 14 04:04:32 2019 -0500
+++ b/align_and_estimate_abundance.xml	Tue Feb 11 12:18:36 2020 -0500
@@ -41,8 +41,6 @@
         --est_method $method.est_method
         #if $method.est_method == "RSEM":
             --aln_method $method.aln_method
-        #else if $method.est_method == "salmon":
-            --salmon_idx_type $method.salmon_idx_type
         #end if
 
         #if $inputs.paired_or_single == "paired":
@@ -133,10 +131,6 @@
                 </param>
             </when>
             <when value="salmon">
-                <param type="select" name="salmon_idx_type" argument="--salmon_idx_type" label="Index type">
-                    <option value="quasi">Quasi</option>
-                    <option value="fmd">FMD</option>
-                </param>
             </when>
             <when value="kallisto">
             </when>
diff -r 983552d5822d -r 56162e446004 macros.xml
--- a/macros.xml	Thu Nov 14 04:04:32 2019 -0500
+++ b/macros.xml	Tue Feb 11 12:18:36 2020 -0500
@@ -7,7 +7,7 @@
         </requirements>
     </xml>
 
-    <token name="@WRAPPER_VERSION@">2.8.5</token>
+    <token name="@WRAPPER_VERSION@">2.9.1</token>
 
     <token name="@COMMAND_PAIRED_STRAND_JACCARD@">
         #if $pool.inputs.strand.is_strand_specific: