Mercurial > repos > iuc > trinity_analyze_diff_expr
comparison tool_dependencies.xml @ 0:d4128a4e49ca draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 30192223eeb60f33a42046921351c6ba3c80c90c
| author | iuc |
|---|---|
| date | Mon, 21 Nov 2016 11:59:35 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:d4128a4e49ca |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="trinity" version="2.2.0"> | |
| 4 <repository changeset_revision="76d63b5c571a" name="package_trinity_2_2_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 <package name="bowtie" version="1.1.2"> | |
| 7 <repository changeset_revision="a1c1a92e13a6" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 8 </package> | |
| 9 <package name="bowtie2" version="2.2.6"> | |
| 10 <repository changeset_revision="0d9cd7487cc9" name="package_bowtie_2_2_6" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 11 </package> | |
| 12 <package name="bioconductor-edger" version="3.14.0"> | |
| 13 <repository changeset_revision="5f4abad5b2c1" name="package_bioconductor_edger_3_14_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 14 </package> | |
| 15 <package name="rsem" version="1.2.28"> | |
| 16 <repository changeset_revision="4567331d510a" name="package_rsem_1_2_28" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 17 </package> | |
| 18 <package name="eXpress" version="1.5.1"> | |
| 19 <repository changeset_revision="93017e8743e5" name="package_express_1_5_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 20 </package> | |
| 21 <package name="bioconductor-limma" version="3.28.10"> | |
| 22 <repository changeset_revision="b313488c66bd" name="package_bioconductor_limma_3_28_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 23 </package> | |
| 24 <package name="deseq2" version="1.10.0"> | |
| 25 <repository changeset_revision="e4a11a7d33d6" name="package_deseq2_1_10_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 26 </package> | |
| 27 <set_environment version="1.0"> | |
| 28 <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">'--max_memory 30G --bflyHeapSpaceMax 30G'</environment_variable> | |
| 29 </set_environment> | |
| 30 </tool_dependency> |