Mercurial > repos > iuc > trinity_contig_exn50_statistic

comparison contig_exn50_statistic.xml @ 12:34840e9c79b0 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 33aaad8d6afce20732d8232fbcd777a3aabf09ec"
author iuc
date Fri, 10 Sep 2021 22:43:27 +0000
parents afa3a9786339
children beafdd47f8cf
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11:b1e9a0355166 12:34840e9c79b0
1 <tool id="trinity_contig_exn50_statistic" name="Compute contig Ex90N50 statistic and Ex90 transcript count" version="@WRAPPER_VERSION@"> 1 <tool id="trinity_contig_exn50_statistic" name="Compute contig Ex90N50 statistic and Ex90 transcript count" version="@WRAPPER_VERSION@">
2 <description>from a Trinity assembly</description> 2 <description>from a Trinity assembly</description>
3 <expand macro="bio_tools"/>
3 <macros> 4 <macros>
4 <import>macros.xml</import> 5 <import>macros.xml</import>
5 </macros> 6 </macros>
6 <expand macro="requirements" /> 7 <expand macro="requirements" />
7 <command detect_errors="aggressive"><![CDATA[ 8 <command detect_errors="aggressive"><![CDATA[
9 ln -s '$matrix' 'matrix.tabular' &&
8 contig_ExN50_statistic.pl 10 contig_ExN50_statistic.pl
9 '$matrix' 11 'matrix.tabular'
10 '$transcripts' 12 '$transcripts'
11 > '$output' 13 > '$output'
12 ]]></command> 14 ]]></command>
13 <inputs> 15 <inputs>
14 <param format="tabular" name="matrix" type="data" label="Expression matrix" help="Matrix of normalized expression values produced by 'Build expression matrix for a de novo assembly of RNA-Seq data by Trinity' tool"/> 16 <param format="tabular" name="matrix" type="data" label="Expression matrix" help="Matrix of normalized expression values produced by 'Build expression matrix for a de novo assembly of RNA-Seq data by Trinity' tool"/>