Mercurial > repos > iuc > trinity_contig_exn50_statistic

comparison contig_exn50_statistic.xml @ 15:41db7569b4ba draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1d443e73d2eb888660bbbc7af198f5bcca9c1a70
author iuc
date Tue, 11 Apr 2023 19:48:34 +0000
parents beafdd47f8cf
children 870ac06dff8e
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14:be3f26533209 15:41db7569b4ba
1 <tool id="trinity_contig_exn50_statistic" name="Compute contig Ex90N50 statistic and Ex90 transcript count" version="@WRAPPER_VERSION@"> 1 <tool id="trinity_contig_exn50_statistic" name="Compute contig Ex90N50 statistic and Ex90 transcript count" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
2 <description>from a Trinity assembly</description> 2 <description>from a Trinity assembly</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="bio_tools"/> 6 <expand macro="bio_tools"/>
11 'matrix.tabular' 11 'matrix.tabular'
12 '$transcripts' 12 '$transcripts'
13 > '$output' 13 > '$output'
14 ]]></command> 14 ]]></command>
15 <inputs> 15 <inputs>
16 <param format="tabular" name="matrix" type="data" label="Expression matrix" help="Matrix of normalized expression values produced by 'Build expression matrix for a de novo assembly of RNA-Seq data by Trinity' tool"/> 16 <param name="matrix" type="data" format="tabular" label="Expression matrix" help="Matrix of normalized expression values produced by 'Build expression matrix for a de novo assembly of RNA-Seq data by Trinity' tool"/>
17 <param format="fasta" name="transcripts" type="data" label="Transcripts" help="De novo assembly of RNA-Seq data"/> 17 <param name="transcripts" type="data" format="fasta" label="Transcripts" help="De novo assembly of RNA-Seq data"/>
18 </inputs> 18 </inputs>
19 <outputs> 19 <outputs>
20 <data format="tabular" name="output" label="${tool.name} on ${on_string}: ExN50 statistics"/> 20 <data format="tabular" name="output" label="${tool.name} on ${on_string}: ExN50 statistics"/>
21 </outputs> 21 </outputs>
22 <tests> 22 <tests>