Mercurial > repos > iuc > trinity_contig_exn50_statistic

comparison contig_exn50_statistic.xml @ 1:570f2b1f3cd9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 7efdf3224552d113a01043ee5bf4517d770df933
author iuc
date Fri, 31 Mar 2017 11:37:12 -0400
parents 1e8a2c87461a
children afa3a9786339
comparison
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0:1e8a2c87461a 1:570f2b1f3cd9
1 <tool id="trinity_contig_exn50_statistic" name="Compute contig Ex90N50 statistic and Ex90 transcript count" version="@WRAPPER_VERSION@.0"> 1 <tool id="trinity_contig_exn50_statistic" name="Compute contig Ex90N50 statistic and Ex90 transcript count" version="@WRAPPER_VERSION@.0">
2 <description>from a Trinity assembly</description> 2 <description>from a Trinity assembly</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"> 6 <expand macro="requirements" />
7 </expand> 7 <command detect_errors="aggressive"><![CDATA[
8 <expand macro="stdio"/>
9 <command><![CDATA[
10
11 contig_ExN50_statistic.pl 8 contig_ExN50_statistic.pl
12 '$matrix' 9 '$matrix'
13 '$transcripts' 10 '$transcripts'
14 > '$output' 11 > '$output'
15
16 ]]></command> 12 ]]></command>
17 <inputs> 13 <inputs>
18 <param format="tabular" name="matrix" type="data" label="Expression matrix" help="Matrix of normalized expression values produced by 'Build expression matrix for a de novo assembly of RNA-Seq data by Trinity' tool"/> 14 <param format="tabular" name="matrix" type="data" label="Expression matrix" help="Matrix of normalized expression values produced by 'Build expression matrix for a de novo assembly of RNA-Seq data by Trinity' tool"/>
19 <param format="fasta" name="transcripts" type="data" label="Transcripts" help="De novo assembly of RNA-Seq data"/> 15 <param format="fasta" name="transcripts" type="data" label="Transcripts" help="De novo assembly of RNA-Seq data"/>
20 </inputs> 16 </inputs>