Mercurial > repos > iuc > trinity_gene_to_trans_map

comparison tool_dependencies.xml @ 0:83c862e77b99 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit e23a8ad798830209db722d5496d19ec7a5e06214
author iuc
date Mon, 01 Aug 2016 14:44:28 -0400
parents
children 405e436ec8b3
comparison
equal deleted inserted replaced
-1:000000000000 0:83c862e77b99
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="trinity" version="2.2.0">
4 <repository changeset_revision="729219ec7049" name="package_trinity_2_2_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="bowtie" version="1.1.2">
7 <repository changeset_revision="a1c1a92e13a6" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="bowtie2" version="2.2.6">
10 <repository changeset_revision="0d9cd7487cc9" name="package_bowtie_2_2_6" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
11 </package>
12 <package name="samtools" version="1.2">
13 <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
14 </package>
15 <package name="bioconductor-edger" version="3.14.0">
16 <repository changeset_revision="8ed6cfd2b21f" name="package_bioconductor_edger_3_14_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
17 </package>
18 <package name="rsem" version="1.2.28">
19 <repository changeset_revision="4567331d510a" name="package_rsem_1_2_28" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
20 </package>
21 <package name="eXpress" version="1.5.1">
22 <repository changeset_revision="93017e8743e5" name="package_express_1_5_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
23 </package>
24 <package name="bioconductor-limma" version="3.28.10">
25 <repository changeset_revision="fc78b4bbe0ab" name="package_bioconductor_limma_3_28_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
26 </package>
27 <package name="deseq2" version="1.10.0">
28 <repository changeset_revision="e4a11a7d33d6" name="package_deseq2_1_10_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
29 </package>
30 <set_environment version="1.0">
31 <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">'--max_memory 30G --bflyHeapSpaceMax 30G'</environment_variable>
32 </set_environment>
33 </tool_dependency>