Mercurial > repos > iuc > trinity_samples_qccheck
comparison macros.xml @ 10:44971c7016b5 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 482fb46ba8d588f2294e21829a0904809b0ec3f1
author | iuc |
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date | Thu, 23 Aug 2018 13:14:03 -0400 |
parents | 226663afe49c |
children | 9871104ea630 |
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9:226663afe49c | 10:44971c7016b5 |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <macros> | 2 <macros> |
3 <xml name="requirements"> | 3 <xml name="requirements"> |
4 <requirements> | 4 <requirements> |
5 <requirement type="package" version="2.6.6">trinity</requirement> | 5 <requirement type="package" version="@WRAPPER_VERSION@">trinity</requirement> |
6 <yield/> | 6 <yield/> |
7 </requirements> | 7 </requirements> |
8 </xml> | 8 </xml> |
9 | 9 |
10 <token name="@WRAPPER_VERSION@">2.6.6</token> | 10 <token name="@WRAPPER_VERSION@">2.8.3</token> |
11 | 11 |
12 <token name="@COMMAND_PAIRED_STRAND_JACCARD@"> | 12 <token name="@COMMAND_PAIRED_STRAND_JACCARD@"> |
13 #if $pool.inputs.strand.is_strand_specific: | 13 #if $pool.inputs.strand.is_strand_specific: |
14 --SS_lib_type $pool.inputs.strand.library_type | 14 --SS_lib_type $pool.inputs.strand.library_type |
15 #end if | 15 #end if |
26 <option value="FR">Forward-Reverse</option> | 26 <option value="FR">Forward-Reverse</option> |
27 <option value="RF">Reverse-Forward</option> | 27 <option value="RF">Reverse-Forward</option> |
28 </param> | 28 </param> |
29 </when> | 29 </when> |
30 </conditional> | 30 </conditional> |
31 <param name="jaccard_clip" argument="--jaccard_clip" type="boolean" truevalue="--jaccard_clip" falsevalue="" checked="false" label="Jaccard Clip options" help="Set if you expect high gene density with UTR overlap"/> | 31 <param argument="--jaccard_clip" type="boolean" truevalue="--jaccard_clip" falsevalue="" checked="false" label="Jaccard Clip options" help="Set if you expect high gene density with UTR overlap"/> |
32 </xml> | 32 </xml> |
33 | 33 |
34 <xml name="citation"> | 34 <xml name="citation"> |
35 <citations> | 35 <citations> |
36 <citation type="doi">10.1038/nbt.1883</citation> | 36 <citation type="doi">10.1038/nbt.1883</citation> |