Mercurial > repos > iuc > trinity_samples_qccheck

comparison macros.xml @ 7:77983b40ffb4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 7f726b691ead726864f1b67230cb5d58e16b5f58
author iuc
date Fri, 15 Dec 2017 08:02:28 -0500
parents 36681c1ad6d7
children 226663afe49c
comparison
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6:8bec0d476fa0 7:77983b40ffb4
7 </requirements> 7 </requirements>
8 </xml> 8 </xml>
9 9
10 <token name="@WRAPPER_VERSION@">2.4.0</token> 10 <token name="@WRAPPER_VERSION@">2.4.0</token>
11 11
12 <token name="@COMMAND_PAIRED_STRAND_JACCARD@">
13 #if $inputs.strand.is_strand_specific:
14 --SS_lib_type $inputs.strand.library_type
15 #end if
16
17 $inputs.jaccard_clip
18 </token>
19
20 <xml name="input_paired_strand_jaccard">
21 <conditional name="strand">
22 <param name="is_strand_specific" type="boolean" checked="false" label="Strand specific data"/>
23 <when value="false" />
24 <when value="true">
25 <param name="library_type" argument="--SS_lib_type" type="select" label="Strand-specific library type">
26 <option value="FR">Forward-Reverse</option>
27 <option value="RF">Reverse-Forward</option>
28 </param>
29 </when>
30 </conditional>
31 <param name="jaccard_clip" argument="--jaccard_clip" type="boolean" truevalue="--jaccard_clip" falsevalue="" checked="false" label="Jaccard Clip options" help="Set if you expect high gene density with UTR overlap"/>
32 </xml>
33
12 <xml name="citation"> 34 <xml name="citation">
13 <citations> 35 <citations>
14 <citation type="doi">10.1038/nbt.1883</citation> 36 <citation type="doi">10.1038/nbt.1883</citation>
15 </citations> 37 </citations>
16 </xml> 38 </xml>