Mercurial > repos > iuc > trycycler_cluster
diff macros.xml @ 0:c767a45616d0 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
| author | iuc |
|---|---|
| date | Thu, 11 Feb 2021 19:26:49 +0000 |
| parents | |
| children | 6f4c8ad6ea01 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Thu Feb 11 19:26:49 2021 +0000 @@ -0,0 +1,46 @@ +<macros> + <token name="@TOOL_VERSION@">0.4.2</token> + <token name="@PIPELINE@"> +**Trycycler pipeline** + + :: + + Trycycler subsample: make maximally-independent read subsets of an appropriate depth. + ⬇ + Trycycler cluster: carries out complete-linkage clustering of all contig sequences. + ⬇ + Trycycler reconcile/msa: reconcile the contigs within each cluster and perform a multiple sequence alignment. + ⬇ + Trycycler partition: split the reads between the different clusters. + ⬇ + Trycycler consensus: generate a consensus contig sequence for each cluster. + + </token> + <xml name="edam_ontology"> + <edam_topics> + <edam_topic>topic_0196</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_0525</edam_operation> + </edam_operations> + </xml> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">trycycler</requirement> + </requirements> + </xml> + <xml name="citations"> + <citations> + <citation type="bibtex"> + @misc{githubTrycycler, + author = {Ryan, Wick}, + year = {2020}, + title = {Trycycler}, + publisher = {GitHub}, + journal = {GitHub repository}, + url = {https://github.com/rrwick/Trycycler}, + } + </citation> + </citations> + </xml> +</macros>