diff macros.xml @ 0:93c6a7423090 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
author iuc
date Thu, 11 Feb 2021 19:24:35 +0000
parents
children 356afed970b4
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Thu Feb 11 19:24:35 2021 +0000
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+<macros>
+    <token name="@TOOL_VERSION@">0.4.2</token>
+    <token name="@PIPELINE@">                                                                                
+**Trycycler pipeline**                                                                                  
+                                                                                                        
+    ::                                                                                                  
+                                                                                                        
+        Trycycler subsample: make maximally-independent read subsets of an appropriate depth.           
+                ⬇                                                                                       
+        Trycycler cluster: carries out complete-linkage clustering of all contig sequences.             
+                ⬇                                                                                       
+        Trycycler reconcile/msa: reconcile the contigs within each cluster and perform a multiple sequence alignment.
+                ⬇                                                                                       
+        Trycycler partition: split the reads between the different clusters.                            
+                ⬇                                                                                       
+        Trycycler consensus: generate a consensus contig sequence for each cluster.                     
+          
+    </token>
+    <xml name="edam_ontology">
+        <edam_topics>                                                                                       
+            <edam_topic>topic_0196</edam_topic>
+        </edam_topics>
+        <edam_operations>
+            <edam_operation>operation_0525</edam_operation>
+        </edam_operations>
+    </xml>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">trycycler</requirement>
+        </requirements>
+    </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">                                                                   
+                @misc{githubTrycycler,                                                                   
+                author = {Ryan, Wick},                                                    
+                year = {2020},                                                                 
+                title = {Trycycler},                                                        
+                publisher = {GitHub},
+                journal = {GitHub repository},                                               
+                url = {https://github.com/rrwick/Trycycler},                        
+                }                                                                    
+            </citation>
+        </citations>
+    </xml>
+</macros>